Gene detail information of Glyur001150s00037547 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05642.1 | 1.00E-08 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_004503835.1 | 4.14E-19 | PREDICTED: uncharacterized protein LOC101511049 [Cicer arietinum] |
| trEMBL | tr|A0A072UJR0|A0A072UJR0_MEDTR | 3.00E-18 | Replication factor-A carboxy-terminal domain protein {ECO:0000313|EMBL:KEH29318.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01150 | 8375 | 10429 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001150s00037547.1 | PF08646.5 | Rep_fac-A_C | 14 | 100 | 1.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.378 |
| SRR1783600 | control | 4.522 |
| SRR1783602 | moderate drought stress | 48.577 |
| SRR1811619 | moderate drought stress | 48.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.294 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.348 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.118 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.098 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.895 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.734 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.243 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.654 |
| SRR2868004 | Drought Stress (root) | 36.524 |
| SRR2967015 | Control (root) | 23.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.063 |
| SRR9715740 | Leaf | 10.495 |
| SRR9715741 | Leaf | 21.766 |
| SRR9715739 | Root | 9.942 |
| SRR9715742 | Root | 25.097 |
| SRR9715743 | Root | 27.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.185 |
| SRR8749028 | MeJA induced 9h | 42.487 |
| SRR8749029 | MeJA induced 9h | 19.684 |
| SRR8749030 | Uninduced | 29.619 |
| SRR8749031 | Uninduced | 10.029 |
| SRR8749032 | Uninduced | 14.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.370 |
| SRR8400027 | Control - Root | 15.880 |