Gene detail

Gene detail information of Glyur001149s00024736

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18610.1	1.00E-66	nucleolin like 2
NR	XP_004505720.1	1.94E-147	PREDICTED: nucleolin 2-like isoform X1 [Cicer arietinum]
COG	YP_004620943.1	2.00E-06	glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
Swissprot	tr\|Q7XTT4\|NUCL2_ORYSJ	1.00E-79	Nucleolin 2
trEMBL	tr\|V7AHU9\|V7AHU9_PHAVU	2.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:ESW03641.1}

Sequence

Transcript Sequence

>Glyur001149s00024736.1
AAAGCCCAAAACCCTAACGAAAGGCTAGTGACACTCACGTACTAGTACTAGTATAAAACAATAGCAGCCGTAAGCTCTCAAAAAAAACGCACACACTCTGGTGTTCCCCAAAACCCTAAACTCTCTCTGAAACCGTAGTAGGGTTTTGNATTGCAGAGCTTCCGCAGCTGCTAGCTTCAGCTTCCATCTCGCCGATTCCTCTCTCGTTTCTTCTACTCTTCTCTCCGAGATGGGCAAGTCAAGCAAGAAATCAGCCACCAAAGTTGATGCTGCTCCCGCTGTGGTTACACCATCGAAGTCTGCCAAAAAAGGCAAGAGACAGTCTGATGCTGAAATCGAGAAGCAAGCGAGTGCAAAGAAGCAGAAGATAGAAGAGGTTGTTCAGAAGCAGAAGAAGGAAGCTAAGGTGCAAAAGAAGAAGGAAAGTAGTTCAGATGAATCTTCGTCTGAATCTGAAGATGAGAAACCTGCAGCAAAAGTTGCTGTTCCTTCGAAAAAGACACCCATAAAAAATGGCACTTTAAGTACCCCTGCCAAGAAAGGCAAGCCAGCTTCCAGCAGTTCAGATGATTCTTCAGAGTCTGAAGATGAGAAACCTGCAGCAAAAGCTTCTGTTCCTTCAAAAAAGCAACCTGCTAAGAATGGCGCTATAAGTACCTCAACAAAGAAAGGAAAACCAGCTCCCAGTTCCAGTTCTTCTGATTCTGAATCCTCAGATGATGAGGATGAAGCTCCAAAGCCCAAGGCGGTCCCTGCTGCTGATACNGATAGCTCTGATTCTGATAGCAGCTCTGATGACGACAATGTAACTAAATCATCTAAGAAGTTGCCTGCTGCTGCTGGACTCAGTAAGAATGCTCCTGCCAAGAAGGTTGATTCTGACTCAACCTCTGATAGTAGTTCAGATGAAGATGATAACAAGAAAAAACCAAAAAAGACTGTCTCCAAAAAGGTACCTGCAGCTGCAACAATTAAGAAAGTGGAGACAAGTGAAAGCTCAGATGATGATTCTAGTGAAAACTCTGATGAAGACAATGATACAAAGCCTACTGCAACTGCCGTGTCAAAGCCTTCTGCTGTTGCAAAAAATAATGTTGATAGCTCAGATTCTGATGATGATAGCAGCTCTGATGAAGACAATAAAAATGCTGTCAAGACTGTTTCCAATGCCAAGTCAGTGCCTGTGTCTAAGCAGCCTGCAAAGAAATCAAGTGATAGTGATTCAGAAGATGAAGAGGACTCCTCTGAGAGTGACTCTGAAGATGAAAAGAAAACTGCTAAAGTTTCTAATGGTAACAAGAAAGCTGTAACTGCTGTGAAGACTGCCAAAAAGGAGTCTAATGAAAGTTCCTCAGACAGTGACTCTTCAGACGACGAGGATAAAATGGATGTTGANGAGGATGATAGTTCTGATGAAAGTGATGAAGAGCCACAAAAGAAAAAGCCTGTGAAAGCTTCAAAGGAAAGCAGTGATAGTTCAGAGGACAGTGAGGAGGAGAAACCCACCAAAACTCCCCAGAAAAAAGTTAAGGATGCTGAGATGGTTGATGCTGCTGCCTCAATGGGAAAGAAAGCTCCTAAAACTCCAGCTACACCAAATGAACAAAGTGGTGCTTCGAAGTCACTATTTGTTGGAAACTTGTCATTTAGTGTGCAGCGCTCTGATGTGGAAAATTTCTTCAAAGATGCCGGAGAGGTCGTNGACGTCCGTCTCGCTGTAGATGATGATGGGAGGTTTAAAGGCTATGGCCATGTTGAGTTTGCAACACCAGATCAAGCCCAAAACGCACTTGAGTGGAACGGGCAAGAATTGCTGCAACGTCCTGTCCGGCTTGATTTAGCTCGGGAAAGGGGCGCTTATACCCCCAATAGCAGGCAATTACTGTATACTAGCAACTGGAATAACTCATCCCAGAAGGGGGAAAGANGCCAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATAAGTCTCTTGGGGAGGACGAGATAAGAGCTAGTTTGGAGGAGCATTTCGGTTCTTGTGGGGAAGTTACAAGGGTGTCGATTCCAAAAGATTATGATTCAGGTGCTGTTAAGGGGTTTGCTTACNTGGACTTCAAAGATTCTGACAGCTTTAATAAAGCTCTAGAACTCCATGAATCTGATCTTGGAGGTTATACTTTGTCCGTGGATGAAGCCAAACCNAGAGACAATAGTCAAGGTTCTGGGGGTAGAGGTGCAGGTGGAAGGAGCGGGGGTGGTCGGTTTGGGGGAAGAGGTGGCAGTGGCGGCAGAGGCCGATTCGGTGGAAGGGATGGCGGTGGCAGAGGTGGTCGTGGAAGAGGTGGTGGTCGGGGTCGTGGATTCCCAAGTAGACCAAGCTTTGCTGCNGAAGGAAAGAAGACTACTTTCGACGATGACGACTAGGATGGCAGTCGTGCGGGAAGCCAAGATTTATTATCTAATGCATTTTTTACTTTATCGTAGTTTTGCTCAGTTTTGGTAATTNTTAGTATGAATTTGGTAAAAGTCTGGTGTGTTGGGAAATTTTTGAGATTGATGGTGTCGTCATATGAATTATGTACTGCAGCTATTCGCACTCTGCTGATTTTTGGTTCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01149	48128	54207	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001149s00024736.1	PF00076.17	RRM_1	466	534	3.80E-16
Glyur001149s00024736.1	PF00076.17	RRM_1	572	644	1.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	116.052
SRR1783600	control	116.517
SRR1783602	moderate drought stress	160.960
SRR1811619	moderate drought stress	160.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	156.996
DRR006520	Root Summer glycyrrhizin high producing strain	154.284
DRR006521	Root Winter glycyrrhizin high producing strain	232.064
DRR006522	Root Winter glycyrrhizin high producing strain	224.269
DRR006523	Root Summer glycyrrhizin low producing strain	148.656
DRR006524	Root Summer glycyrrhizin low producing strain	148.349
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.948

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	253.240
SRR2868004	Drought Stress (root)	174.042
SRR2967015	Control (root)	167.429

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	76.198
SRR9715740	Leaf	92.273
SRR9715741	Leaf	77.468
SRR9715739	Root	26.915
SRR9715742	Root	166.393
SRR9715743	Root	141.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	365.714
SRR8749028	MeJA induced 9h	285.801
SRR8749029	MeJA induced 9h	204.622
SRR8749030	Uninduced	25.807
SRR8749031	Uninduced	18.891
SRR8749032	Uninduced	27.200

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	198.206
SRR8400027	Control - Root	167.896