Gene detail

Gene detail information of Glyur001149s00024735.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05990.2	1.00E-84	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004505719.1	0	PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Cicer arietinum]
COG	YP_004652861.1	2.00E-112	enoyl-ACP reductase [Parachlamydia acanthamoebae UV-7]
Swissprot	tr\|Q9SLA8\|FABI_ARATH	1.00E-161	Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (Precursor)
trEMBL	tr\|I3SAH2\|I3SAH2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK37264.1}

Sequence

Transcript Sequence

>Glyur001149s00024735.1
CACAAAGGAAACCAAAACCTCAACCTCGCCAACTCAGCATCATTTCGACACTTCCAAAGTTTCCCACTCCTGCAGCGGCTATAACTCTGCATCATTCTCCTCCTTCAACCCCCACCAAACTCTTATCTCCTACAACCACACCANCTACCCCATTGCTTTCTGTTGGATCACTGCTTCCAAGTCCTCATTTTTCTCCCACATTGGTGCCTTTAGTTACTACCCATCAATCATCCGATTTAGGGTCTCTTCTCCATACTACACGCATTGAAGATGGCAACAACATCATTTTCTGGCTTGCANATTGCAATGTCAAGATCATGCATTCCTGCATCACAAAGGATTGCAGATGTGAGCGCTGCGGTTCTTGGTGGCAAGTCCAAGGTGGGATCATGGAATAAACTTGCAAGTGCATGTCATGTTGCATCAGTGCAACCCTTCCAGNGGGGATTTACATCATTGTCTGCAAAATCTATCAAAGTTGGTACAAAGGCAATGTCCGAGTCTAGTGAACAAAGTCCAATTTCAGGATTGCCGATTGATTTGAAAGGTAAAAGGGCATTTATTGCTGGTGTGGCCGATGACAATGGATATGGATGGGCAATTGCAAAATCTCTTGCTGCAGCAGGAGCTGAAATTCTTGTTGGCACATGGGTACCTGCTCTGAATATTTTTGAGTCCAGCCTACGACGTGGAAAATTTGATGAATCACGCATATTACCAGATGGTTCGTTGATGGAGATTACTAAAGTTTACCCCTTGGATGCTGTTTTTGACAATCCTGAGGATGTTCCAGAAGATATAAAAACAAACAAGCGCTATGCTGGATCTGCTAAATGGACAGTTCAGGAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGCATAGACATCCTTGTGCACTCACTTGCCAATGGACCAGAGGTNACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCCGCAATATCTGCATCTAGTTACTCCTATGTGCTTGCTTTTGAAGCGGGTAGAAAGCGCAAAATTAGAGTCAATACTATATCTGCNGGTCCACTAAGAAGTCGTGCTGCAAAAGCGATTGGATTCATCGATATGATGATTGATTATTCACTAGCCAATGCACCTCTGCAGAAAGAACTATCAGCAGAGGAGGTGGGCAATGCAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGAACTGTTCTATATGTTGACAATGGTTTGAATGCTATGGGTGTTGGAGTTGACAGTCCAATATTTGAAGATCTTGACATTCCCAAGGACCAGCATTAAAGTGGCTGCTATCACCACACAAAAAGCAAGTGTCACATGAATTAGCATAGCAATGATGCTGTTTTGGTTTAACTGCTCTAATCCCAAAATTACTTACCCTCTGCCCAACTAAGACAATGTAGGATCCACTTTGAGTATTTGCTTTTCCCTTTTTGTAGGCTATTTTTCAGTTTTTTTCCCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01149	37853	43156	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00208	fabI	EC:1.3.1.9 1.3.1.10	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Biotin metabolism	map00780

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001149s00024735.1	PF13561.1	adh_short_C2	242	323	5.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.582
SRR1783600	control	63.925
SRR1783602	moderate drought stress	56.990
SRR1811619	moderate drought stress	56.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.647
DRR006520	Root Summer glycyrrhizin high producing strain	44.393
DRR006521	Root Winter glycyrrhizin high producing strain	8.483
DRR006522	Root Winter glycyrrhizin high producing strain	8.375
DRR006523	Root Summer glycyrrhizin low producing strain	39.462
DRR006524	Root Summer glycyrrhizin low producing strain	39.865
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.290

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	105.310
SRR2868004	Drought Stress (root)	52.641
SRR2967015	Control (root)	49.300

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.678
SRR9715740	Leaf	17.817
SRR9715741	Leaf	21.849
SRR9715739	Root	39.429
SRR9715742	Root	38.417
SRR9715743	Root	37.212

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	101.912
SRR8749028	MeJA induced 9h	33.953
SRR8749029	MeJA induced 9h	68.979
SRR8749030	Uninduced	8.017
SRR8749031	Uninduced	3.282
SRR8749032	Uninduced	7.315

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	103.596
SRR8400027	Control - Root	98.478