Gene detail information of Glyur001149s00024731.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48930.1 | 0 | glycosyl hydrolase 9C1 |
| NR | AES89439.2 | 0 | endo-1,4-beta-glucanase [Medicago truncatula] |
| COG | YP_007159459.1 | 4.00E-81 | Cellulase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|Q9M995|GUN5_ARATH | 0 | Endoglucanase 5 (Precursor) |
| trEMBL | tr|G7JNJ8|G7JNJ8_MEDTR | 0 | Endo-1,4-beta-glucanase {ECO:0000313|EMBL:AES89439.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01149 | 22006 | 26434 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9,CBM49 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001149s00024731.1 | PF00759.14 | Glyco_hydro_9 | 34 | 456 | 3.20E-129 |
| Glyur001149s00024731.1 | PF09478.5 | CBM49 | 469 | 519 | 8.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.036 |
| SRR1783600 | control | 0.044 |
| SRR1783602 | moderate drought stress | 0.069 |
| SRR1811619 | moderate drought stress | 0.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.646 |
| SRR2868004 | Drought Stress (root) | 12.547 |
| SRR2967015 | Control (root) | 8.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.012 |
| SRR9715741 | Leaf | 0.030 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.027 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.110 |
| SRR8749028 | MeJA induced 9h | 0.107 |
| SRR8749029 | MeJA induced 9h | 0.146 |
| SRR8749030 | Uninduced | 0.387 |
| SRR8749031 | Uninduced | 0.127 |
| SRR8749032 | Uninduced | 0.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.799 |
| SRR8400027 | Control - Root | 1.303 |