Gene detail

Gene detail information of Glyur001147s00029003.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01370.1	0	MAP kinase 4
NR	XP_003624049.1	0	Mitogen-activated protein kinase [Medicago truncatula]
COG	YP_003104067.1	3.00E-22	serine/threonine protein kinase [Actinosynnema mirum DSM 43827]
Swissprot	tr\|Q40353\|MMK2_MEDSA	0	Mitogen-activated protein kinase homolog MMK2
trEMBL	tr\|G7L6L0\|G7L6L0_MEDTR	0	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}

Sequence

Transcript Sequence

>Glyur001147s00029003.1
AAATTCACAGATAGCATGAGCACTCCAATCTTCATAAGAAGAAAAAGGCTTGAAATGAAAAGCCACATCTTCACGGGTTCACACGAGCGTTTCCAGTTCAAAAGCCTAACTTCAATGTTCACATAAACATGCTTACGCTAACAAACACACCTACTCCTCTCTCTCTCTCTCTGGTCAAATCTCTCTCTCTCATACGCATTTTCTCTCTCTTCCACTGTGTACAAATCCAAGAGCCTCGCCCAAACGAAATGTCAAACGCTTTTACTACTCCTAAGTCCTACCGACACGTCCCTTCTTAATTCAGTGCACCCCACTTCACCAATTTAGCTCCTTTCTCTCAAAAATCCTTCCTTTCTTTGTTTGGTCTCATCCCATTTTTCTGGTTTTGGATTCTGACCTTACACACACCAGACATGTCTTTTGATCAGTCAGCTGCTGCTGCTTCAGCTGACCACAACAACATCAAGGGAGTTCCCACTCATGGTGGACGCTATGTTCAGTACAATATCTATGGCAACCTCTTTGAGGTCTCAAGGAAGTATGTCCCTCCTATCCGCCCTGTGGGAAGAGGAGCTTATGGTATTGTTTGTGCTGCTGTAAATGCGGAGACAAGGGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTACGAGAAATTAAACTTCTTCGGCACATGGATCATGAAAATGTGATAGTCCTTAAAGACATTATACGACCACCACAGATGGAGAATTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACCGATCTGCATCAAATAATTCGTTCCAATCAACCATTGACCGATGATCATTGTCGGGTTTTCCAGTATTTTTTGTATCAGTTGTTACGAGGACTGAAATATGTACACTCAGCAAATGTTCTGCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATTCGAATTGTGATCTTAAGATTGGAGACTTTGGTCTAGCTAGAACTACATCTGAAACTGATTTCATGACTGAGTATGTGGTTACTCGATGGTACCGGGCTCCAGAATTACTTCTTAATTGTTCAGAATATACTGCAGCCATTGATATATGGTCTGTTGGTTGCATCCTTGGTGAAATCATGACAAGAAAACCCCTATTTCCTGGGAAGGATTATGTTCATCAGCTCAGATTGATCACAGAGCTCATAGGTTCACCCGATGACGCCAGCCTTGGATTTCTACGAAGTGATAATGCTCGTAGATATGTAAGACAGCTTCCGCAATATCCAAGGCAACCATTTGCTGCNAGGTTTCCCAACATGTCTCCTGGTGCAGTTGATTTGTTAGAGAAGATGCTTGTCTTTGATCCAAGCAGGCGCATTACAGTTGATGAGGCTCTGTGCCACCAATACTTGGCACCTCTCCATGATATTAATGTGGAGCCTGTTTGCCCTAGACCTTTTTGTTTTGATTTTGAGCAACCATCTTTCACAGAAGAAGATATCAAGGAATTAATCTGGAGAGAATCTGTGAAGTTCAATCCTGATCCACCTATGTATTGAGATTTTNCATTTTACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01147	73998	78663	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K20600	MPK4	EC:2.7.11.24	MAPK signaling pathway - plant	map04016

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004707 MAP kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001147s00029003.1	PF00069.20	Pkinase	48	333	5.70E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.777
SRR1783600	control	9.970
SRR1783602	moderate drought stress	7.010
SRR1811619	moderate drought stress	6.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.955
DRR006520	Root Summer glycyrrhizin high producing strain	8.077
DRR006521	Root Winter glycyrrhizin high producing strain	5.826
DRR006522	Root Winter glycyrrhizin high producing strain	5.697
DRR006523	Root Summer glycyrrhizin low producing strain	12.305
DRR006524	Root Summer glycyrrhizin low producing strain	12.262
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.330
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.262

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.947
SRR2868004	Drought Stress (root)	43.749
SRR2967015	Control (root)	27.428

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.540
SRR9715740	Leaf	18.463
SRR9715741	Leaf	34.266
SRR9715739	Root	5.738
SRR9715742	Root	19.462
SRR9715743	Root	17.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.129
SRR8749028	MeJA induced 9h	12.872
SRR8749029	MeJA induced 9h	10.841
SRR8749030	Uninduced	12.944
SRR8749031	Uninduced	9.878
SRR8749032	Uninduced	5.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.447
SRR8400027	Control - Root	24.804