Gene detail

Gene detail information of Glyur001147s00029001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46080.1	2.00E-116
NR	AES80268.2	0	plant/F1M20-13 protein [Medicago truncatula]
Swissprot	tr\|Q9LMM6\|BPS1_ARATH	8.00E-127	Protein BPS1, chloroplastic (Precursor)
trEMBL	tr\|G7L6L1\|G7L6L1_MEDTR	0	Plant/F1M20-13 protein {ECO:0000313\|EMBL:AES80268.2}

Sequence

Transcript Sequence

>Glyur001147s00029001.1
ATGGACAGAAAGCAAATCAAAACAAAACAAAGCAACAACCGCTCAAACCCTAATCGACTTTTTCTGATCCGATCTATTCCATTCCAGGATCCACCCAGGTCATTCTTCCCTTTTGGAAATCCTTTCCGGATGATATCGCCTAAAGGCACAAANTTGCCTCCACAACTGCTGGCAGTGATATGTGCTTTTGAGGCAACTTTGGAAGAGAGGCTGAAAAAGCTTATTCCCAAAAGCAAGGATGAAATCCTCAGCTTGTCTTGGATGACTTCGGCTATGCAGGCACTTTGTGAGAGCCACAATGGCATTAAAACCCTCATAACAGAGCTTGAGCTGCCTGTGCATGATTGGGATGAGAAATGGATNGATGTGTACTTGGACATTAGTGTGAAGTTGCTAGATATATGCATTGCATTTAGCTCTGAGTTATCACGTCTGAACCAGGGTCAACTTTTACTTAAGTGCACGTTGCACCATTTAAACTCTTCCTCTTCAGAGCAGCTTGTTCGGGCCTGTTCTTCACTTGATGCTTGGAGGCAGCATATTGGNTCTAGAAACCCTAGGATTGAGAAATGTGGCAGCATTCTGGATAATCTNGTGGGATCACTCGATCTTCCAAAGGTTAAAAAGTCGGCCAAAGGGAAGGTTTTGATGCAAGCTATTTATGGAGTAAGGGTTCTGACAGTATTTGTATGCAGTGTGTTCACTTCGGCTTTTTCAGGATATCCAAGGAATCCGATAGATTTGAATGTGGATGACATGTATTCTTGGGCTCCGTCTTTCAAAAGTTTGCAGAATCTTGTAAATGAGGAAATTAGAGTTAGATTTTCAAGTGGGAGATTTACCGTATTGAATGAGTTGGAAGNAGTTGATTCCTCTGTGAAGGAATTATACCCGACCATCCAAGGTGCTGTAGATACCGTTGAGACAGAATCACAGGTGAAGATTGTTGAGAAATTAGGCAGAGAAACAGAGAAGCTCTCACAGGNATTAGATCTTCTTGCAAAGGAAGTGGATGGCTTTTTCCAAGTGGTCTTGACTGGTCGTGATGCCTTGCTATCTAATCTGAGGTCAGGCGTAACTGTCAATGACCGCATCTTGGGAGGTAACAGAGATGCACAGAGAACAAAAGCGATGAGTACATGTGAAGAAGTCTCAGAACAATTGCAACTCCTCTGTATCCCAAGTGCTGCAACTGATCTCCTGACACCTCAGCTCACAGAATCACTCAAAGGCTTGTTTTAAGTGCCAATTGCATTCAGTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01147	63504	67021	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001147s00029001.1	PF05633.6	DUF793	62	169	0.0001
Glyur001147s00029001.1	PF05633.6	DUF793	195	352	4.10E-05
Glyur001147s00029001.2	PF05633.6	DUF793	38	145	9.30E-05
Glyur001147s00029001.2	PF05633.6	DUF793	171	328	3.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.194
SRR1783600	control	22.414
SRR1783602	moderate drought stress	20.609
SRR1811619	moderate drought stress	20.425

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.802
DRR006520	Root Summer glycyrrhizin high producing strain	45.927
DRR006521	Root Winter glycyrrhizin high producing strain	31.577
DRR006522	Root Winter glycyrrhizin high producing strain	31.016
DRR006523	Root Summer glycyrrhizin low producing strain	58.435
DRR006524	Root Summer glycyrrhizin low producing strain	58.875
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.197
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	85.994
SRR2868004	Drought Stress (root)	117.126
SRR2967015	Control (root)	110.170

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	115.645
SRR9715740	Leaf	127.998
SRR9715741	Leaf	156.683
SRR9715739	Root	29.737
SRR9715742	Root	70.707
SRR9715743	Root	64.974

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.238
SRR8749028	MeJA induced 9h	61.149
SRR8749029	MeJA induced 9h	54.975
SRR8749030	Uninduced	53.131
SRR8749031	Uninduced	67.494
SRR8749032	Uninduced	56.340

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.915
SRR8400027	Control - Root	86.541