Gene detail

Gene detail information of Glyur001147s00028998

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01310.1	6.00E-97	Ribosomal L5P family protein
NR	NP_001276281.1	1.58E-161	50S ribosomal protein L5, chloroplastic-like [Glycine max]
COG	YP_007126714.1	2.00E-77	LSU ribosomal protein L5P [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|O04603\|RK5_ARATH	4.00E-128	50S ribosomal protein L5, chloroplastic (Precursor)
trEMBL	tr\|C6TMD0\|C6TMD0_SOYBN	6.00E-162	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU24072.1}

Sequence

Transcript Sequence

>Glyur001147s00028998.1
TCCCCCTCCTCTCCATTTTCCTCTATGCCCTCTTATCCTATCCAAGTGCGGCGAAATCAGGCATTTTCCATGTTCTTGGCATTTACAGTTTGATTTTCCATCCCTTATCCACGNATTCATGTGATTTTGTCCCCACACAGGACCCAACACAAAATCCTTGTGCCCTTTCCCTTCGCCAATATTCACTCTCGTCCAATCTTCACAAGGGCACTCTAAACCCCCTTCCTTCCCTTTGCCTCCAAAGAACACTATCCATATTATTAGCTATTAGCTATAGGAGGGTGAACACTGATCCACCACTACCACCACCACTATGGCCACCGCTCCTTCGCTTCTACACTCATCTGCCTCCTCCTTTCTCGCTCAATTTCGCCCCTTTACACCTCAATCCTCTCCTTCACTGTTCCCTCTTGGAAACAGGCACGGGAGTTCAGTGGTGTCCGTGAGGGCCACTGCTGCTGGGGCTGTGCTGGTGGAGAAGTCTGAGGCAGAGAAGGTCAATAGGCTCAAAACAACTTACAGTGAGAAGATTATTCCCTTGCTCATGGAGGAGTTCTCTTACACCAACATACACCAGGTGCCAAAAATTGAGAAGATTGTTGTTAACTGTGGCATTGGAGATGCTGCACAGAATGCAAAAGGTTTGGATGCCGCAATTAGTGATCTAGCAAAGATCACAGGGCAGAGACCTGTTAAGACTCGGGCCAGGGCTTCCATCGCCACCTTCAAGATCAGGGAAGGCCAACCGCTTGGGATTGCTGTGACACTCAGAGGAAATATGATGTACTCATTCCTAGACCGAGTGGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCCAACAGCTTTGATGGGCATGGGAATTTCAGCATTGGCATTAAGGACCAGAGTGTGTTCCCTGAGGTAAGGTCTGAAATTCTTGGTAAGGCTAGGGGAATGGATGTCTGCATCACAACAACAGCTAAAACTGATAAAGAAGCACTCAGGTTATTGGCTCTCATGGGTATGCCATTCAGAGAGGGAGGTGAGCCTGCCTCAACAATCCCCAAAAAGAGGATGAAGTCTCATCATTTTGAGGCAAAATCAAAAGGAAGGGGGAAGAAGTAAGGAACTATATAAGGNTGTGTGTAACCAGAAGAAACATTATGTTGTATCACTTGTTTTTTCTTTCAGATGTAATATTATTGATGATTGATGATTCTTTTTGTAAGAGATATGGATATAGATATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01147	32681	35506	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001147s00028998.1	PF00281.14	Ribosomal_L5	85	141	2.00E-22
Glyur001147s00028998.1	PF00673.16	Ribosomal_L5_C	145	238	4.70E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.864
SRR1783600	control	21.078
SRR1783602	moderate drought stress	17.068
SRR1811619	moderate drought stress	17.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.490
DRR006520	Root Summer glycyrrhizin high producing strain	20.146
DRR006521	Root Winter glycyrrhizin high producing strain	11.944
DRR006522	Root Winter glycyrrhizin high producing strain	11.442
DRR006523	Root Summer glycyrrhizin low producing strain	21.953
DRR006524	Root Summer glycyrrhizin low producing strain	21.284
DRR006525	Leaf Summer glycyrrhizin high producing strain	79.442
DRR006526	Leaf Summer glycyrrhizin high producing strain	79.732

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.611
SRR2868004	Drought Stress (root)	17.791
SRR2967015	Control (root)	18.661

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.698
SRR9715740	Leaf	85.256
SRR9715741	Leaf	64.619
SRR9715739	Root	7.516
SRR9715742	Root	11.740
SRR9715743	Root	12.547

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.146
SRR8749028	MeJA induced 9h	12.615
SRR8749029	MeJA induced 9h	13.847
SRR8749030	Uninduced	7.056
SRR8749031	Uninduced	1.263
SRR8749032	Uninduced	6.776

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.309
SRR8400027	Control - Root	33.400