Gene detail

Gene detail information of Glyur001147s00028995.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52660.2	6.00E-80	Homeodomain-like superfamily protein
NR	KHM99331.1	1.59E-143	Transcription factor ASG4 [Glycine soja]
Swissprot	tr\|Q8H0W3\|RVE6_ARATH	9.00E-98	Protein REVEILLE 6
trEMBL	tr\|I1N3U7\|I1N3U7_SOYBN	9.00E-144	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G47230.1}

Sequence

Transcript Sequence

>Glyur001147s00028995.1
CATATATACAGAGAGAGAGGGAGATTGAGTGGGNGTGAAGGTCGGTTCCAACTTGTGGAAATTGGTGTGCAAATTGTTACCTCTCACTNTCACTCAGTTCTGATAAAAAACCGAAGCTAAGCAAAGCCACCAAAACCAGAAGGAACAAGCAACACACACAAACAAAGGAACAACTAAACAGTTCTACAGCTGCAAAGGTTGTCGAATATACATATTGTGAGTGTTATTTATGGTTTCCCTCAACCCAAACCCTCCTCAAAATTTTCACTTTTTGGACCCCATCTTCCACATGGAGGATCCGAATAAGAAGATCCGAAAACCCTATACCATTACCAAGTCCAGGGAGAGCTGGACCGACCAGGAACACGACAAGTTTCTCGAAGCTCTTCAGCTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTAGGTTCCAAAACAGTTATCCAGATAAGGAGTCATGCACAAAAGTATTTTCTGAAAGTTCAAAAGAATGGCACAAGTGAACATGTACCTCCTCCCCGCCCAAAAAGAAAAGCTTCTCACCCATACCCACAAAAAGCTCCTAAAAATGTTCCTGCTGTGTCACCGGTTACTGAGCCATTGCAATCTTCATCTGCTTTCACTGAACCATCATATAGGCCAGACTCGTCATCCATGCTTAGAACTCCTATTAGCAGTGTGCCTTTGTCATCTTGGAGTTATAATGTTATGCCACCAGTTAGTCTACCACAAGTGACCAAAGATGATTTGGTATTGACTCAACAAACCATTCCTCTCAATAACTGCTGTAGCAGTAGCACTGAGAGCACTCCAAGGGCTTGGCCAAGTATAAAACAAACAGAACAAGGTGACCAAGGCAAGCAAAATAAAGTGATGCCAGATTTTGCGCAAGTCTACGGCTTCATTGGCAGCGTATTTGATCCAAATGCAACTAATCATCTACTGAAGCTGAAACAGATGGACCCAATAAATGTCGAAACCGCATTGCTGTTGATGAGAAACCTCTCCATCAATTTAACGAGTCCTGAATTTGAGGATCATGTCAGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01147	9356	13987	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001147s00028995.1	PF00249.26	Myb_DNA-binding	38	82	8.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.216
SRR1783600	control	18.015
SRR1783602	moderate drought stress	23.859
SRR1811619	moderate drought stress	23.644

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.268
DRR006520	Root Summer glycyrrhizin high producing strain	16.552
DRR006521	Root Winter glycyrrhizin high producing strain	31.969
DRR006522	Root Winter glycyrrhizin high producing strain	30.806
DRR006523	Root Summer glycyrrhizin low producing strain	12.093
DRR006524	Root Summer glycyrrhizin low producing strain	12.566
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.652

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.532
SRR2868004	Drought Stress (root)	10.275
SRR2967015	Control (root)	8.812

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.501
SRR9715740	Leaf	19.879
SRR9715741	Leaf	9.817
SRR9715739	Root	2.117
SRR9715742	Root	4.525
SRR9715743	Root	3.626

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.162
SRR8749028	MeJA induced 9h	37.368
SRR8749029	MeJA induced 9h	23.488
SRR8749030	Uninduced	6.801
SRR8749031	Uninduced	20.438
SRR8749032	Uninduced	19.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.288
SRR8400027	Control - Root	10.558