Gene detail

Gene detail information of Glyur001147s00028994

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01510.1	0	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_007139790.1	0	hypothetical protein PHAVU_008G058900g [Phaseolus vulgaris]
COG	YP_007206359.1	5.00E-25	phosphoglycerate dehydrogenase-like oxidoreductase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|O23702\|CTBP_ARATH	0	C-terminal binding protein AN
trEMBL	tr\|V7B1U6\|V7B1U6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11784.1}

Sequence

Transcript Sequence

>Glyur001147s00028994.1
TGGTGATACTTTTTGGCATTGCTGAAGGGTATACCTTCTCCGATTTAAATTTTTTTTATCAGAAAAAAAAAGAGTTTACTGAAGTAGTAATAAATTATTAAAAACAAAATCCCCCATTTCTAGGCGCTTCCCAAAAAGTGGCAAGCTGGTCGAAGAGTGACCTGACCTGTGTGAAGCGGCGTAGTAGGATAGCATAACTGTTTTTGTAACCGAGGAAGGAAGAAGAAGAGGACACGNAGATCCACTCCTGTGCGGCAATGCCTCACCGTAACAACGCTGCGCCACTACCCTTAGTGGTGAGCCTAAACTGCATCGAAGATTGCTCCCTCGAACTCGAATCCCTCGCCGGCGTCGCCTCCGTCGAGCACGTCCCTCTCAGCCGTCTCTCCGACGGCAAGATCGAGTCCGCCGCCGCCGTCCTCCTCCACTCTCTCGCTTANCTCCCACGCGCCGCCCAGCGCCGCCTCCGCTCCTACCACCTCATCCTCTGCCTCGGCTCCGCCGACCGCTCCGTCGATTCCGCACTCGCCGCCGACCTCGGCCTTCGCCTCGTCCATGTAGACACCTCCCGCGCCGAGGAGATCGCCGACACCGTGATGGCGCTGTTCCTCGGCCTCCTCCGCCGCACTCACCTGCTCTCCCGCCATGCTCTCTCCGCCTCCGGCTGGCTCGGCTCCGTCCAGCCTCTCTGCCGTGGGATGCGCCGGTGCCGCGGCCTCGTCCTCGGGATCGTCGGTAGATCTGCTTCTGCTAGGGCTTTGGCCACTCGCAGCTTGGCTTTCAAAATGAGCGTCCTCTATTTCGATGTTCACTCGGGAAAAGGAAAAGGGAACTTCCCCCCTGCAGCACGAAGAATGGATACTCTTAACGATTTACTTGCTGCAAGTGACCTTATATCACTCCATTGTGCTCTAACAAATGAAACAATGCAGATTATTAATGCGGAATGTCTTCAACATGTAAAACCTGGTGCTTTTCTTGTAAATACGGGTAGTAGTCAGCTTTTGGACGATTGTTATGTAAAGCAGCTTTTGATTGATGGAACCTTAGCTGGATGTGCTTTGGATGGCGCNGAAGGGCCACAATGGATGGAAGCATGGGTTAAGGAGATGCCTAATGTGTTGATACTTCCACGAAGTGCAGATTACAGTGAAGAGGTTTGGATGGAGATAAGGGAGAAAGCTATATCTATATTACAGACATTCTTCATTGATGGAATTATTCCAAAGAATGCCTTGTCTGACGCAGAAGAAGAGAGTGAGGTGGATGATGAAAATGAACAATCCGATCAACAATACAAAGAAAATGCTTTACAGATTATTGTTAGAGAGCAAACAGATGATGTTTACCTAAGTCCTGAAAGCTCCCAAAAGAAAATAGGTGAAGTAAAAGAGTCTTCATCCCAGCATCAGGTTTCAAGTTTGACCCAGAGTACATCTGCTCGATCCGAAGGAAGGCGCAGCAGGTCAAGTAAAAAGGCCAAAAAGAGGCATACCCGTCAGAAGTCCCAACAAAAACCAGAAGATCCGTCTGCACTGGAGAAAGAAGGNACATCTCAGAGAGATGATACTGCTATGAGTGGTACTGATCAAGCTTTGAGCTCCAGCTCTGAAGACTCAAGAAGTAGAAAAACTCCAGTAGAATCTATACAAGAATCAATTGCCACTCGTGCTATAAAGTCAAGCACAAAGCTTAGTGGAAACTGTACTGAACTTTTGAAAGATGGATATATTATAGCTCTCTATGCAAGAGACCGGCCTGCACTTCACGTCTCAAGGCAAAGAGTTAAAGGTGGAGGTTGGATCCTAGATTCTATGTCAAATGTGTCAAAAAGAGACCCTGCTGCACAGTTCCTTATCATTTTCAGAAACAAGGACACAATTGGCTTGCGATCTCTTGCTGCTGGTGGAAAATTATTGCAGATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCACAGTTTTGATGTCTGGGAGAATTGGACACTGGAAGGTTCCTTACAGGAATGTAGACTGGTGAACTGTAGAAACCCTTCGGCTGTTCTGGATGTACGCATTGAGATTTTGGCAACTGCAGGCGAAGATGGAGTTACTCGTTGGCTTTAATAGATTAGCATGACACTATGACAAGTTTGTTCTTTCTAAGTCTATGTAGAGTGATTCCAGGTCTGTATTCCTCGAAAAGGTCGAGCTTGTACACCATTTCTGTCTTGCGACTTAATGATCTTTCAAATGATTCTTTGTGAAAGATTGGAATGTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01147	601	5723	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001147s00028994.1	PF02826.14	2-Hacid_dh_C	114	292	2.80E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.715
SRR1783600	control	16.831
SRR1783602	moderate drought stress	22.230
SRR1811619	moderate drought stress	21.923

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.398
DRR006520	Root Summer glycyrrhizin high producing strain	13.059
DRR006521	Root Winter glycyrrhizin high producing strain	11.184
DRR006522	Root Winter glycyrrhizin high producing strain	10.756
DRR006523	Root Summer glycyrrhizin low producing strain	15.666
DRR006524	Root Summer glycyrrhizin low producing strain	16.062
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.666
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.554

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.506
SRR2868004	Drought Stress (root)	24.868
SRR2967015	Control (root)	24.685

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.874
SRR9715740	Leaf	11.397
SRR9715741	Leaf	12.967
SRR9715739	Root	7.142
SRR9715742	Root	19.865
SRR9715743	Root	18.590

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.197
SRR8749028	MeJA induced 9h	5.358
SRR8749029	MeJA induced 9h	4.673
SRR8749030	Uninduced	1.252
SRR8749031	Uninduced	1.188
SRR8749032	Uninduced	1.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.494
SRR8400027	Control - Root	26.906