Gene detail information of Glyur001145s00032028 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48730.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004514268.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9FKC3|PP424_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g48730, chloroplastic (Precursor) |
| trEMBL | tr|A0A072TZW2|A0A072TZW2_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH22731.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01145 | 72849 | 77547 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001145s00032028.1 | PF01535.15 | PPR | 175 | 200 | 0.0015 |
| Glyur001145s00032028.1 | PF13041.1 | PPR_2 | 206 | 250 | 1.40E-11 |
| Glyur001145s00032028.1 | PF13041.1 | PPR_2 | 273 | 321 | 4.60E-11 |
| Glyur001145s00032028.1 | PF13041.1 | PPR_2 | 344 | 392 | 1.30E-09 |
| Glyur001145s00032028.1 | PF13041.1 | PPR_2 | 450 | 496 | 2.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.790 |
| SRR1783600 | control | 1.980 |
| SRR1783602 | moderate drought stress | 3.615 |
| SRR1811619 | moderate drought stress | 4.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.933 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.444 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.711 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.685 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.673 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.393 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.830 |
| SRR2868004 | Drought Stress (root) | 6.615 |
| SRR2967015 | Control (root) | 8.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.537 |
| SRR9715740 | Leaf | 14.449 |
| SRR9715741 | Leaf | 9.278 |
| SRR9715739 | Root | 2.333 |
| SRR9715742 | Root | 4.367 |
| SRR9715743 | Root | 3.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.751 |
| SRR8749028 | MeJA induced 9h | 3.408 |
| SRR8749029 | MeJA induced 9h | 1.918 |
| SRR8749030 | Uninduced | 0.983 |
| SRR8749031 | Uninduced | 1.970 |
| SRR8749032 | Uninduced | 1.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.826 |
| SRR8400027 | Control - Root | 4.890 |