Gene detail

Gene detail information of Glyur001145s00032024

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11300.1	5.00E-88	protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding
NR	KEH22732.1	0	G-type lectin S-receptor-like Serine/Threonine-kinase [Medicago truncatula]
Swissprot	tr\|Q9SXB4\|Y1130_ARATH	9.00E-112	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor)
trEMBL	tr\|A0A072TZ68\|A0A072TZ68_MEDTR	0	G-type lectin S-receptor-like Serine/Threonine-kinase {ECO:0000313\|EMBL:KEH22732.1}

Sequence

Transcript Sequence

>Glyur001145s00032024.1
ATGGGTTTCAGCAGCTGTGTAAATTTGATCTCTGTTTTGTTCATGCTGTTTTGCTATTTATTAGAAGTTGGTATTGCCATAGACACCATCACACCATCTCAATTCATCAAGGACCCTGAGACTCTAATCTCCAAAGATGGTAACTTCACCTTGGGCTTCTTTAGCCCTGGAAATTCTACAAATCGCTACGTTGGAATTTGGTGGAAGTCTCAATCAACAGTCATATGGGTGGCCAACAGAAACCAACCACTGAATGATTCTTTTGGGAGTGTCACAATATCTGAAGATGGCAATCTTGTGGTATTGAATGGACAGAAACGGGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCGATACTAGTTCCCACTTTTCAGACTTTGGTAACCTTGTTCTTTTGGAAAACACAACAGGAAAAATCTTATGGCAGAGTTTTCAGCAACCTTCAGATACATTAGTGCCTGGTATGAAACTTTCAAGCAACAGAAGAACAGGTGAGAAAGTACAACTCACCTCATGGAAAAGTCCTTCAAATCCATCCATTGGGAGCTTCTCTTTAGGTATTGAAGACCTAAATGTACTTGAAGTGAACATTTGGAATGAAACTCGACCATATTGGCGCAGTGGTCCATGGAATGGTGTGGCCTTTACTGGGATACAGGTGATGATAACTCCATATATTAATGGTTATCGTGGCGGAGATGATGGGGAAGGAAATATTGAAATCTATTATACAGTACCAAATGAGGTAGCACCAGCAATCTATAAGCTAAATTCGCAAGGCCTGAATGAAGCAAAATGGTGGGATGATGAGAAGAAAGAAATGAAAGTTGCATGGACTAGTCAAGGATCGGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAGTTCAAAGAGCTCACCAATATGCAGCTGTTTGAGAGGGTTTGAACCTAGGAACAAACAGGAATGGAGTAGGCACAATTGGACTAGNGGGTGTGTTAGGAGGACACGTTTGCAGTGTAAAATAATCAACAATAACAACACAAGTGAAGATGAAAACGCAGATGGATTTTTGAAACTGCAGATGGTTAAAGTTCCAGATTTTGCAGAGCAGTCACTTCNTACACCAGATGAGTGCAGAAGCCAATGCTTGGAGAACTGCTCTTGTATTGCATATTCTCATGATGACGGGATCGGATGTATGTCTTGGACTCATAATCTACTTGACACACAACAATTCTCAAGTGGAGGACTTGATCTATATGTCCGTGTAGCCTATACAGAACTTGCTAAAAGGAGAAACATAACAATCATCATTACAATTACAGTGATAATAGGAACACTCATAATTCTCATTTGTGCATGTATCATGTGGAGAACAACTTCTAACCAGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01145	34145	35650	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001145s00032024.1	PF01453.19	B_lectin	72	181	1.30E-29
Glyur001145s00032024.1	PF00954.15	S_locus_glycop	207	317	8.20E-25
Glyur001145s00032024.1	PF08276.6	PAN_2	351	408	1.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.420
SRR1783600	control	0.394
SRR1783602	moderate drought stress	0.337
SRR1811619	moderate drought stress	0.344

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.155
DRR006520	Root Summer glycyrrhizin high producing strain	0.155
DRR006521	Root Winter glycyrrhizin high producing strain	0.129
DRR006522	Root Winter glycyrrhizin high producing strain	0.091
DRR006523	Root Summer glycyrrhizin low producing strain	0.028
DRR006524	Root Summer glycyrrhizin low producing strain	0.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.067
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.530
SRR2868004	Drought Stress (root)	30.739
SRR2967015	Control (root)	26.529

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.214
SRR9715740	Leaf	0.817
SRR9715741	Leaf	0.882
SRR9715739	Root	0.036
SRR9715742	Root	0.259
SRR9715743	Root	0.185

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.179
SRR8749028	MeJA induced 9h	2.372
SRR8749029	MeJA induced 9h	0.889
SRR8749030	Uninduced	1.439
SRR8749031	Uninduced	5.622
SRR8749032	Uninduced	0.979

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.264
SRR8400027	Control - Root	2.448