Gene detail

Gene detail information of Glyur001145s00032019

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11330.2	8.00E-88	S-locus lectin protein kinase family protein
NR	XP_004514286.1	1.01E-167	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330-like [Cicer arietinum]
Swissprot	tr\|Q9SXB8\|Y1133_ARATH	1.00E-99	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 (Precursor)
trEMBL	tr\|A0A072TZ15\|A0A072TZ15_MEDTR	9.00E-158	S-locus lectin kinase family protein {ECO:0000313\|EMBL:KEH22682.1}

Sequence

Transcript Sequence

>Glyur001145s00032019.1
ATGACAGTCATCATTACTATAACAGTGATAACAGTAACTGCCTTAATTCTCGGTTGTGCTTATATCATGTGGAGAAGGACTTCAATCCACCTTGGCCTGGATACAATGGACAGAAGACAAAATTTTATCTCTAAAAGATCCTGGAATATGTCCATTCACATAGGACTTCTGTGTGTACAGGACTTTGCCGCGGACAGGCCTAGTTTGGCCGCTGTAATTTCTATGCTTAATAGTGAGATTGTAGATCTTCCTACTCCAAGGAAACCTGCATTCATCCTTAGAGAGAATATGTTGAATTCAGTGTCCTCTGAAGAAAGCAGTGGACTATACTCCCTCAATGATGTTAGGATACCCTTTTCGAAAACTTACTATCTTAATGGTATATGTGTTGGACATGATGGAGAAGGAAATGTTTACTTCCTTTACACAATAGTGGATACGGTTGGTTTCACGATCTATATTCTGAACTCACAAGGCAGTTGTGAAAAAAGATGGTGGGATGAAGAGAAGAAAGAATGGCAAGTATTATGGAATACTCATGAAATAGAATGTGATGTTTATGGTGTGTGTGGACCTCATGCAAGCTGTAACTCACTGAGGTCGCCAATGTGCAGCTATTTGAAAGGGTTTAAGCCAAAGAACACAGAGGAATGGAACAGACAAAATTGGACTGGTGGGTGTGTTGGAGGACACCTCTGCAGTGTGAAAGGGGCAACAATAAAAGGAGATGGGTTTTTGAAACTGCAGATGATCAAAGTTCCTGACTTTGCAGATGGGTCATCACTCACACTTTCACCAGACACGTGTAGAAGCCGGTGTTTGGAGAATTGCTCTTGTGTTGCATATTCACATGATGCTGACATTGGTTGTATGTCTTGGACTGGGAATCTAATTGACACACAGCAATTCTCAATTGGAGGACTTGATCTATACATTCGTGTAGCCTATACAGAACTTGATGAAGAGAGAAACATGACAGTCATCATTACTATAACAGTGATAACAGTAACTGCCTTAATTCTCGGTTGTGCTTATATCATGTGGAGAAGGACTTCAATCCACCTTGGCCTGGATACAATGGACAGAAGACAAAATTTTATCTCTAAAAGATCCTGGAATATGTCCATTCACATAGGACTTCTGTGTGTACAGGACTTTGCCGCGGACAGGCCTAGTTTGGCCGCTATTGTAGATCTTCCTACTCCAAGGAAACCTGCATTCATCCTTAGAGAGAATATGTTGAATTCAGTGTCCTCTGAAGAAAGCAGTGGACTATACTCCCTCAATGATGTTAATAATAACATTGTTGTTGATGCCGCTACAAACATCACCACATCCATCAAAGACCCTGAAACTCTAAGATCCGATAATGGAAACTTCACCTTGGGGTTCTTCAGTCCCAAAGAAAATTCCACAAATCTTTACTTAGGAATTTGGAGCAAGTCTCAAGAAGCTGTTGTGTGGGTGGCTAACAGAGACCAACCACTGAAGAATTCTTCATCTGGGGTTGTTACAATATCCAACGATGGCAACCTTGTGCTATTGGATTCACAAAAAGAAAATGTTATTTATTGGTCATCAAATTCAAATGTTTCCAACACAACAACATCATCCAATAATTCAAGTTTCCAGCTTTCAGATTATGGAAGCCTTGTCTTGTTTGAAACAGAAACAGGAGACACCATTTGGGAGAGTTTCAACCACCCTTCAGATACATTGTTGCAACACATGAGATTCTCAAGCAACAAAGGTGAGGAAGGTAAACTCACATCATGGAAAACCACTTCTGATCCATCCATGGGAAGCTTCTCATTGAGCATTGAGCACCCTAATTTACCTGAATTGTTCGTTTGGAATAATAACCAAACTAAGCCATATTGGCGTAGTGGTCCATGGAATGGTCAAGTCTTTATAGGCATAATTGACATGGGAACACTTTATCTGAATGGTTTTCATGTTGAGAAGAATACGGTAGGTTCTGTTGATTTATATTTCACAGCAGATGACTTTGGACTCAATTTCTATGNCCTTAACTCTCAAGGCCAAATTCAAGAGAGGACTTGGAATGATGAGGAGGAAAAATGGGAAGTGACATGGAGTAACCAACGATCAGATTGTGATGTTTACGGTACATGCGGGGCATTTGGTAAATGTAATTCAACAGGGTCACCAATATGTAGTTGTTTGGAAGGGTTTGAACCAANGAACAAAGAGGAGTGGAATAGACANAACTGGAGTGGNGGTTGTGTTAGGAAGACACCACTCTTGGAGTGTGGGAAAAGGGGTAGCAGCAATAATGATCAGAACACAAGTAGTGTGGATGGTGGTGGTGGTGATAAAGAAGATGGGTTTTTGAAATTGGAAANGGTCAAGGTTCCTGATTTTTCAGAATGGTCCAATGTTATAGAGGATTTATGCAGAAGCCAGTGCTTGGAGAATTGCTCTTGCATTGCATATTCATATGAGGAAGTTATTGGTTGTATGTCTTGGAGTGTGGATCTAATTGACATACAACAGTTCCCAAGTGGAGGAGCTGATCTATACATTCGTGTAGCCCATACAGAACTTAGCATGCCAGTGGTAATAGGAATTCTCATACTTGTTGCTGGTGCATGTGTCATTCGGAGAAAGGCTTCGCATGCGGAATCAGCTGCAGACAGGCCCACTATGGCTGCAGTAATTTCTATGCTTAACAGTGAAATCATGGATCTTCCTCCAGCAAGGGAACCTGCATTCACCCTGAGGCAGAATATGCAGATCTCAGTCTCCTCTGAAGAAAGCAATAGATTGCACTCCATCAACACTGTCAGTATCACAGATATCCAAGGAAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01145	5859	24820	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001145s00032019.1	PF00954.15	S_locus_glycop	133	214	1.20E-18
Glyur001145s00032019.1	PF08276.6	PAN_2	241	300	1.50E-15
Glyur001145s00032019.1	PF01453.19	B_lectin	485	599	7.10E-27
Glyur001145s00032019.1	PF00954.15	S_locus_glycop	627	736	2.60E-27
Glyur001145s00032019.1	PF08276.6	PAN_2	780	837	4.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.465
SRR1783600	control	0.402
SRR1783602	moderate drought stress	0.272
SRR1811619	moderate drought stress	0.335

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.308
DRR006520	Root Summer glycyrrhizin high producing strain	0.308
DRR006521	Root Winter glycyrrhizin high producing strain	5.057
DRR006522	Root Winter glycyrrhizin high producing strain	4.601
DRR006523	Root Summer glycyrrhizin low producing strain	1.135
DRR006524	Root Summer glycyrrhizin low producing strain	1.178
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.312
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.602
SRR2868004	Drought Stress (root)	13.587
SRR2967015	Control (root)	7.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.717
SRR9715740	Leaf	0.624
SRR9715741	Leaf	3.847
SRR9715739	Root	0.018
SRR9715742	Root	0.116
SRR9715743	Root	0.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.582
SRR8749028	MeJA induced 9h	7.390
SRR8749029	MeJA induced 9h	2.330
SRR8749030	Uninduced	7.105
SRR8749031	Uninduced	15.407
SRR8749032	Uninduced	6.091

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.033
SRR8400027	Control - Root	1.821