Gene detail

Gene detail information of Glyur001144s00035321

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11040.1	1.00E-59	HSP40/DnaJ peptide-binding protein
NR	XP_003522576.2	1.42E-147	PREDICTED: uncharacterized protein LOC100782604 [Glycine max]
COG	YP_002299041.1	5.00E-17	chaperone protein DnaJ [Rhodospirillum centenum SW]
Swissprot	tr\|Q03363\|DNJH1_ALLPO	2.00E-18	DnaJ protein homolog 1 (Precursor; Fragment)
trEMBL	tr\|K7KM69\|K7KM69_SOYBN	5.00E-148	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G42750.2}

Sequence

Transcript Sequence

>Glyur001144s00035321.1
ATGTTTAAAAAAAAAAAAGCACCTCATATTTGCTTCACCATGCATTCATCATCACCTGTTGACATTGTCACTCTTACATCCTCTCTTCCCCTCATGGTGGACACTACCTGCGTCTTCGAAATAAACTCCCTTTGTGGCCTTACCAAAGCATACAAATCAATCATCAAAAGATGGCTTCGCCGTAGCAAGAAATCCTCATCCTCCTCCTCGAGAGAAAACAATATTAAACAACAACGCCAGAACCAAACTCAACAACAGGAGGGTACGAACATGAATGGAATTCACAGCTTCAGATTGAATGGAGATCCTTTNAGAGAGGACCCTCTAATGATGGGATCAAGATCAGGTTCAGGGTGTAGTTTATATAGGCATAGAAGCTTAGACAATTCATATTTTCCTTCCAAGGTTGGTAATTCTTCCATGTCTAGTAATACAAGCAGAAAGGTTAATAATAATNATCATCATCATCATCACACAAGAAGCAAGAGCAGGGAGAGTTGTGATTTTATGCCTACCCCTTCTTCATGTTATAGCAGTGGAAGTTTTAGAATGAATCCTCATATTCAATCGACAAATGCTAGTGGGCGTAGGAGTGGTACCCCAATTATGTATTCAAGTTCATCTGGGATGCTAAAACCACCACCAATTGAGAAAAAACTTGAATGCACCCTTGAAGAGTTGTGCTATGGATGCAAGAAAAAGGTCAAGATTACAAGGGATGTACTCACAGATACCGGGGGAATAGTTCAAGAGGAGGAGATACTAACAATAAATGTGCAGCCTGGATGGACAAAAGGAACAAAGATTACATTTGAAGGGAAAGGGAATGAGAGAGCAGGTGCAGCATACAGAGAAGACATAGTATTCTTCATCTCTGAGAAGAGACACCAATTGTTCAGAAGAGAAGGGGATGACTTGGAACTGAGAGTGGAGATTCCTTTGGTAAAGGCACTAACTGGGTGTACAATATCAGTGCCACTATTGGGGGGAATGGATATGAGTTTGACATTGGAAGATATCATATACCCTGGTTATGAGAAGATGGTCATTGGTCAAGGTATGCCAATCTCAAGAGAACCAGGGAAGAGAGGAGACTTAAGAGTTACATTNCTAGTTGAGTTCCCAACTAGACTCACACATAATCAGAGATCTGAGGTTTTTGGTATTTTACAAGATTCTTGTTGTTATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01144	68899	71572	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001144s00035321.1	PF01556.13	CTDII	305	384	7.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.507
SRR1783600	control	0.454
SRR1783602	moderate drought stress	0.564
SRR1811619	moderate drought stress	0.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.906
DRR006520	Root Summer glycyrrhizin high producing strain	0.902
DRR006521	Root Winter glycyrrhizin high producing strain	0.842
DRR006522	Root Winter glycyrrhizin high producing strain	1.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.861
DRR006524	Root Summer glycyrrhizin low producing strain	2.784
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.468
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.381

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.383
SRR2868004	Drought Stress (root)	4.828
SRR2967015	Control (root)	6.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.059
SRR9715740	Leaf	1.167
SRR9715741	Leaf	1.451
SRR9715739	Root	0.288
SRR9715742	Root	1.262
SRR9715743	Root	1.241

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.192
SRR8749028	MeJA induced 9h	8.063
SRR8749029	MeJA induced 9h	7.123
SRR8749030	Uninduced	15.554
SRR8749031	Uninduced	7.654
SRR8749032	Uninduced	7.332

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.409
SRR8400027	Control - Root	1.435