Gene detail

Gene detail information of Glyur001144s00035319

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G44130.1	2.00E-63	Eukaryotic aspartyl protease family protein
NR	KHN20145.1	8.77E-99	Aspartic proteinase Asp1 [Glycine soja]
Swissprot	tr\|Q0IU52\|ASP1_ORYSJ	6.00E-55	Aspartic proteinase Asp1 (Precursor)
trEMBL	tr\|D7KNR6\|D7KNR6_ARALL	1.00E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:EFH70240.1}

Sequence

Transcript Sequence

>Glyur001144s00035319.1
CTAAGTCAGCACAGCAAGCAAACGCGTTAGAGCTCAGTGTCCTAATTAATTCCTTCTCAGTTTCAACCAAAATTCTTGATTTTGATTCTGAAACAGCAACCCCTTCTTCGAGTTTTTTTTTTCCAAATTAAAAATGGATATTGTGAAAAACAGGGGAATTTCACTTGCAACGTTCTTGTTCTTCCTTCTACTTTCTTCCATTTTCCCACCCCCTTTCTCAGCAGCCAATCGGCTCCTCCACAACAAGAAGCGAAGCCCCCCAATTTCTCCTCCTCATTTTTATTCCCTCGTTTCCTCTACTGTTTTCCCTCTCCATGGAAATGTATATCCACTTGGATATTATACGGTGTCCCTCAACATTGGCAATCCCCCCAAGCCTTTCGATTTTGACATTGACACCGGTAGTGATCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCCCACGGAAACCTTGTGAAATGTGCTGATCCACTGTGTGCCGCAGTTCAGTCAACACCAAGACATCATCCCTGTACTAACCCGAATGAGCAATGTGACTATGAGGTTCAGTATGCAGACCAGGGATCATCTCTGGGTGTATTGGTCCGAGACCCCATTTCCCTAACAAGCGCAAATGGCTCTTCACTTAGCCCCACAGTGGCATTTGGGTGTGGATATGATCTGGAGTATTCTGGTTCTACTCCCCCACCTTCAACAGCAGGGGTCCTTGGCCTNGGTAATGGCAAGGCAAGCATTTTGTCCCAGCTTCACTCTCAAGNCCTAATTCGCAATGTGGTGGGTCACTGCTTAAGTGGGCAAAAAGANGGAGGGTTTTTATTCTTTGGGGATAAGTTCATTCCCTCATCCGGAGTCGTTTGGACACCTATAGTGCAGAGTTCCTCAGACCCTGCTACTGAGCTTCACGAAATCAAGGAATTCGAAGTTTCAGTTACCCCTGAAGCTTATCTAATTATAACTAAACATGGCAACGTCTGCTTGGGGATCCTTGATGGCACTCAAATTGGCCTTGGAAATCTTAACATAATTGGAGACATCTCTATGCAAGATCAAATGGTAATTTATGACAATGAGAAGCAGCAGATTGGATGGGCCTCTGCCAATTGTGATAGACTTCCACAGTCATAATTCAAATGTATTATGATTTCATCTTCTATATATTGTCACTGAGTTGTGCTATTTGACACGACAATATTAATATTGACACGAAATGTTACAAAATGCAATTTAATGCATCAGGGCCTTTAAAATCATACGGGATGGATGATAATAATACGTGAATGGCTAATAAAAGACCACTGTTCATTCGTGTCAAGCAATTTCCATTGTCACTGCCTATAGAGCTTACTCACTAGGAAATCACACCGGTGCTCTATTGTTAGGCAGGGAATTAATGCTTGGTTGGCAAATTGGAAAGCATATATGATACCAAATATACAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01144	41419	45646	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001144s00035319.1	PF14543.1	TAXi_N	70	237	1.50E-31
Glyur001144s00035319.1	PF14541.1	TAXi_C	267	325	4.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.968
SRR1783600	control	0.907
SRR1783602	moderate drought stress	0.203
SRR1811619	moderate drought stress	0.176

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.814
DRR006520	Root Summer glycyrrhizin high producing strain	11.023
DRR006521	Root Winter glycyrrhizin high producing strain	0.076
DRR006522	Root Winter glycyrrhizin high producing strain	0.074
DRR006523	Root Summer glycyrrhizin low producing strain	11.077
DRR006524	Root Summer glycyrrhizin low producing strain	10.744
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.610
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.825

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.280
SRR2868004	Drought Stress (root)	9.572
SRR2967015	Control (root)	2.986

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.189
SRR9715740	Leaf	23.619
SRR9715741	Leaf	38.487
SRR9715739	Root	12.872
SRR9715742	Root	12.772
SRR9715743	Root	12.268

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.345
SRR8749028	MeJA induced 9h	81.015
SRR8749029	MeJA induced 9h	113.141
SRR8749030	Uninduced	81.336
SRR8749031	Uninduced	89.661
SRR8749032	Uninduced	70.368

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.061
SRR8400027	Control - Root	6.349