Gene detail

Gene detail information of Glyur001142s00041219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15010.2	6.00E-91	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_006582133.1	0	PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like isoform X1 [Glycine max]
COG	YP_004446487.1	2.00E-06	RNP-1 like RNA-binding protein [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q9LKA4\|UBA2C_ARATH	3.00E-121	UBP1-associated protein 2C
trEMBL	tr\|K7KWT9\|K7KWT9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G33940.3}

Sequence

Transcript Sequence

>Glyur001142s00041219.1
TACTTCACTTCCAGTGCCAGACTCTCAGTCTCACGTTTCTGAAGAGAGCTGCCTATTAGGGATTTATTAGGGTTAGGGTTTAACAACCGCCCCTTCATCATCATCGTCATCTCCAACCTCTTTCAAAAAATTCCAATCCAAATGGCCATGGATCCTCTGAAGAAGCGCAAGCTCGACGAGAACGGCTTCGGCGGCGGCGAACCCGACCACCTGNAGCTCTCCCCGTCGGACGCCCGCAAGATGATCGAGCGTTTTACGCCGGACCAGCTCCTTGACATCCTACAGGACGCCGTCTCCCGTCACTCCGACGTCCTCGCCGCCGTCCGCTCCGTCGCCGACCCCGACGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGTTGGGACACAACCACCGACGGCCTCCGCTCCCTGTTCTCTGCCTACGGCGAGCTCGAGGAGGCCGTCGTGATCCTCGACAAGGCCACCGGTAAGTCCAAGGGCTACGGCTTCGTGACGTTCCGCCATGTCGACGGTGCCCTCCTCGCCCTCCGCGAGCCAAGCAAGCGAATCGACGGCCGCGTCACCGTCACGCAGCTCGCAGCCGCGGGGAATTCCGGCTCCAACGCCAACGCTGCCGACATCGCGCTCCGGAAGATTTATGTCGCCAACGTTCCGCCGGATCTCCCTGCGGACAAGCTCCTCGCACACTTCTCCCTCTACGGGGAGATCGAGGAAGGCCCATTGGGCTTCGATAAGCAGACAGGGAAGTCCAAAGGGTTTGCTCTCTTCGTTTATAAGACCCCAGAGGGAGCACAATCCGCGCTTTTGGATCCCGTGAAGACCGTTGAGGGGAGGCAGTTGAACTGTAAGCTGGCGATAACCGACGGGAAGCAAGGGAAGCGCGGCGCCGGGGCCGGTGCAGGTCCCGACGCGGTTCAGGGTCACGGGAATTCTCATGGTCATGGTGATGGGATGGGGATGCCTCCCCCGGCGGGTTCGGGTCCTGGGTCGCTTTCGGGTCAGTATGGCGGCCCGGTTGGTATGGGTTCTTATGGTGGGTATGGTGGTGGGATGCAGGGTCAGCCTCCGATGGGGAATCATCCTATGAATTCTTCCGTTGGTGTGGGGAATCAGGCCCCGTCGATGGGCGGTGCCGGTGGGTACGGTGGTGCCGGGATGGGTGGTCATTATGGAGGCTATGGTGGACCCGCTGCTGCGGCGAGTTTTGGTGGTGCTGGTGGTTTGGGAGGAGGTAGTGGCGGTGCTGGTGTGGGTGCGGGTGTTGCTGGTGGACTTGGTGGTTCTGCTGGTGGTGCTGGTTCATTGTACAGATTGCCTGGTTCAGGTGGAATGCAAGGTGGTGGTGGGTATCCAGAGGGTGGACATTACAGTTTATCAGCTTCATCTGGTTACCAGAATCAGCATCATCATCCTCCTACTGGGGCTTCTCCTGTTCCAAGGGTTCCACCTGGTTCAATGTATCCGAATGTGCCACCTTACTACTGAGTGTTTCATCGCTTATTGGGCGCAGATGCTTTGTGTGCTTCTGGTGATTGCGTTATTGCAGACTATGTGCTCTGGTGTAATGAATGTGTTAGCCTGTCCTTTTACCTCTTGACTTCATCTGCTTCCTTTTTAAGCNTTGATTCATATGATGCTAGTTAAAGCCATTGAGATAGACTAGTTTTGTACCTTTAGCTGGATCACTTGGCTGTTACAGCCTCTGTTTTAGTTATATGGTTCTGAATTATGGTGACTTTTATTAGATGAGCTTGTATTTAGTTACATTGTCCTCTGGTTATCAATATTTTCTATTGCAGTGTGATACCCTGCTTATTTGATGATGTGATTATCTAAATTTTCTTTGTAAAATTTAAGATGTATTGTAACCATAATTGTGTCGTCGATGGTTTCTAATGGCAAATCAACTTTGTTCATCCGATAAGCATGTTAACTTAACAAAGAATTTTTACATTGGGAATTAATATCAGCTGTTAATATATGGCATTTTCAAAAGAGGGTCTGCTTGTAACTAATTTGTCATATTTGACCGTTTTACAGCCTTACACTTTGCCTTGGATCAGCCCCCTCAACTTAACTTGGCAAAATATTTTTTGACATTTAGAATTGTGATGAGTTCTCTTATTCTTCAAAATCACCACTAGTGTTTTCTAAATGTGGTCTGCAAGTAATTAAATCGTGATAATGTCCTTTATACTTATATAGTCCTTGGATTTGCCCTGATATTCCAATTTCTTTTGTTTCTCCCATTACTAAGGAACTTCCATCCAGTTTATTGCACCTTTGTCAGGCTTGTGCTGTATGAATTTTTTGTCAACACCTTGCTGGGGTGACACTTTGTTGCCATAGATTGCTATTCACTGGCATAGATTGTCGATACTCTTGAACTGTACTAAATTTGAATTTGAATTTGAATTTGTAGTTCTCTTGCTCCCTGAATATTGTGCAATATATTCTTTTTCACTGTACCACCTACAGACTGAGTCAAATCACCTTGTTTGAGTTCACCCTCATGGTAAAGACCCTCATGTAGATCTGGTTTGTGAGAGATAGCTGTGAAATTGTAAATTTCAATAAATTGATGCTGTCGTTTCCAATCTGATGGAATTTAGTTTGTTTTGCTGATTGGTGATGAGGCACCTTGTTTCTTTTAGTGTTCTAGCTTGAGATGGTTGATTGACTAATGTGAAGACTGGTTGAGAAACATACTGTGTGTGTGATTTAGTTCCCTCCCTCCCTGTCCCCCTTTCTTTTTAGTTTTTAATATTTAAGGTTTGGAAATTTAATCCAAATTTTATAGTATTTGGTCTGATCTTGGAACAAAGTCTAATCCTGGATTGCCTCAGCAATTTATTTATCTGACTTTCTGTTTACTGTCGGCTTCCATACCCTCTCCTCTCCTTTGCTTGTGCACTCTGGATATTTCACTCTTTTTGGGTGATATTATGCTTTATCGAATCTGCTTATTATGTGGGTTGTGCTTCTTTTAGATTGATACTTAAAATCGCAATTCTTGTTAAGCCTGCTTGAAAATAATGATAATGACATGTTCAAAACAAAAGCTGGATTTACTTGGGTTAATCTTCATGTTCTCTGCAGTTTCTTTGCATTAGGTTGTGGGATTTTCATTATAGGTCAAATTTGTATCCTTTAATCAAATTTTGATTTTTCCCCTAAATTTCTTCTGCTCCCATATCCGTACAAATTCGTATTCTAAAAGCTATAATGTTAATAACGATTTGTTGTNAGATAACTTTTTTTATCAAAGTACTGGCATGTGAAGATTAATCAAGGATACTTGCTTGTTCGCAATACTAATCCTAAAAANCTTATTCATTTGGGTTCACTGGTCCTAAAAAACTTACTCAGTACCACCTGAGTAATTTAAGTCAGAATTATCAATCAATTTCATTTATCAAAATTATTATTATTTTGTATAAGAAAAGTAGGTTTTGGCCTTTTAGACTGTCACGTTGTCACCTTTCAGGTTGTGATGCGTCATTTCTCCAATTCTTTATTTTCAACTAAAGTTATTGTTTGTTGTTTTTGTTGGGAAAAAGACACGTACTATGATCCTAATTACTGTCATTACCTGTGTTTCTGGTATAATGCTCTTTTACTCCCTGTTGGTTGTTTTGTTGTAAACATCGTGGAAGGTTCCAACATCTGGTTGAACATCNACTTAAGATGAGTTGCCGCTTGAGTTACTTGATCATCAGTCTAGTTAGAGTCTTCAGTGGCAGAATTGAGAATCTGGTTTGCGGCTGGGAGGCACTTCCTTTTTGAAAAAGATGTTAACTCAAGTTTCCGAGAGACCCTGTGATGTATGTGTCAACTTGGTAATAGTACAGTCAATTTTGTTGGTAATAACGTCTTAAAAGAATGAATAACGTGTTTCGCTAAATTGGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01142	32806	38423	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001142s00041219.1	PF00076.17	RRM_1	74	141	5.30E-16
Glyur001142s00041219.1	PF00076.17	RRM_1	166	233	6.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.315
SRR1783600	control	37.514
SRR1783602	moderate drought stress	86.410
SRR1811619	moderate drought stress	85.851

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.248
DRR006520	Root Summer glycyrrhizin high producing strain	36.840
DRR006521	Root Winter glycyrrhizin high producing strain	54.906
DRR006522	Root Winter glycyrrhizin high producing strain	53.379
DRR006523	Root Summer glycyrrhizin low producing strain	38.091
DRR006524	Root Summer glycyrrhizin low producing strain	37.965
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.468
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.530

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.785
SRR2868004	Drought Stress (root)	52.536
SRR2967015	Control (root)	55.747

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.824
SRR9715740	Leaf	30.376
SRR9715741	Leaf	30.612
SRR9715739	Root	66.254
SRR9715742	Root	54.742
SRR9715743	Root	52.879

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.988
SRR8749028	MeJA induced 9h	20.202
SRR8749029	MeJA induced 9h	10.712
SRR8749030	Uninduced	7.004
SRR8749031	Uninduced	6.822
SRR8749032	Uninduced	10.225

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.942
SRR8400027	Control - Root	49.851