Gene detail

Gene detail information of Glyur001142s00041217

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13570.1	1.00E-32	F-box/RNI-like superfamily protein
NR	AFK36982.1	3.16E-111	unknown [Medicago truncatula]
Swissprot	tr\|Q9FZ70\|FDL1_ARATH	4.00E-37	F-box/FBD/LRR-repeat protein At1g13570
trEMBL	tr\|I3S9P0\|I3S9P0_MEDTR	1.00E-111	Uncharacterized protein {ECO:0000313\|EMBL:AFK36982.1}

Sequence

Transcript Sequence

>Glyur001142s00041217.1
ATGCAGTTGATTTTCAATTTGAGTTTACTTATGACTCGGTCAAACAAGAAGGCTGACCATGGTGATGACATTGATCGAATCAGTGACTTGCCAATTAATGTGATTGATGGCATCCTAGAGCACTTGAATATCNTGGATAGTATTAGGACCAGTATTTTGTCGAGAAAATGGAGGTATAAGTGGGCTTCAGTCCCACAACTTGCGTTTTGTGCAACATTTTTTCATTATTATGCGCATCTTGGAAAGCTTGCAATCTCTAGTATCATCACGGAAGTCATTTTACTCCACAATGGGCTGATACACAAGTTCAGTCTTGATATCCCTCCGAGACACAGAATCGTAATTGAACGCCTCAATGAATGGATTTTGCATTTGTCAAGGAATGGCATTAAATATCTTGAGCTTGAAAACCTGGATCTGCGACGTCCCTATCAAATGCCTTCTCATGTCTTCTCTTGTCACGGATTGACTTACTTGGAACTTGGCACTTTTAAATTATCACTTCCGCCTAATTTTTGTGGCTTTAAAAGTCTTCTTACCCTTCACTTGTATTGCATTACATTTGAGTCCTCTGGAGCACTTGGGAGTCTTATTTCTGGTTGCCCCTTACTTGAAGAGCTCATGATTTCACACTGTGATGGTTTTGAATGTATTGATCTCTTCGTTCCTACTCTCAAAGTCTTGAGCATATATAGTGATGAAGATGTAGTTATCAAGTCAATTTGTCTGAACAAAGCAAAGAATCTGATTGATCTTACACTCATCATTGCTTGGCACATGGTTGAGAAAGGCACAGGATCTGATTTGACCATCAAAGGTTTGCCAAATATTCGTAGGCTTACTCNGGGAACAACTTGTGATAAGATCTTGTCTGCAGATACCATTTCACAAACGCTGCTAAAGTCATCCAGCTCCTTGGAGTATCTCAAATTGATTGCTGTTTTGAATGAAAGAGGAGAATTTTTGTTTATTGTTGATTTACTTCAAAATGCTCCTAACTTGGTGGAACTTGTTATAGAGAGTGAAACGCTTAATGCACAAGAACCGCTAGCGGAAAGTACCTTTGGTGATGCACGAGTGCTAGCAGAGGAGTTGGAGTGCAAAAGGCGTTGCCTTAGTCAACTTCAAACCGTGAATATCGGAGTTGGATCTTCCTTTAAATATGCATTGAGTTTGACACGGTTCATACTTGCAAATTGCTCATCGCTAAGGACTTACTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01142	13869	15809	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001142s00041217.1	PF00646.28	F-box	26	61	0.00013
Glyur001142s00041217.1	PF07723.8	LRR_2	177	202	2.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.453
SRR1783600	control	0.413
SRR1783602	moderate drought stress	0.856
SRR1811619	moderate drought stress	0.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.740
DRR006520	Root Summer glycyrrhizin high producing strain	0.725
DRR006521	Root Winter glycyrrhizin high producing strain	0.793
DRR006522	Root Winter glycyrrhizin high producing strain	1.030
DRR006523	Root Summer glycyrrhizin low producing strain	0.990
DRR006524	Root Summer glycyrrhizin low producing strain	0.902
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.532
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.249
SRR2868004	Drought Stress (root)	1.015
SRR2967015	Control (root)	0.846

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.358
SRR9715740	Leaf	0.791
SRR9715741	Leaf	0.905
SRR9715739	Root	0.000
SRR9715742	Root	0.404
SRR9715743	Root	0.087

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.246
SRR8749028	MeJA induced 9h	4.131
SRR8749029	MeJA induced 9h	2.596
SRR8749030	Uninduced	5.491
SRR8749031	Uninduced	4.166
SRR8749032	Uninduced	2.819

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.091
SRR8400027	Control - Root	1.111