Gene detail

Gene detail information of Glyur001141s00037774

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33470.2	8.00E-64	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_007019702.1	8.13E-149	RNA-binding family protein isoform 2, partial [Theobroma cacao]
COG	YP_003267833.1	1.00E-14	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SHZ6\|UBA1A_ARATH	3.00E-19	UBP1-associated proteins 1A
trEMBL	tr\|A0A061FJR7\|A0A061FJR7_THECC	3.00E-149	RNA-binding family protein isoform 2 {ECO:0000313\|EMBL:EOY16927.1} (Fragment)

Sequence

Transcript Sequence

>Glyur001141s00037774.1
GCTGTGTATATAATTCATGTCCTTATTATGTGAAGGCCCTTTCCTCTTTTTTCCATCTTTTGCTTTCTCTCTTCTCTTCCCTCCCAATTCTCTCTCTCTCTCTTATATTTTTTTTGATCTCTCTGACCTAATTGTCTCTCTTCCATCTTCTCATCNAACATCTCCACCACCCACAACCTTGAGAAGAAGATCCCTCTAAATTTAGTGGGTCTTTCTCCTCTTCTCCATCCACCCCTTAGATCTGTCTATAGTACTCATTGTTTGACCCAAAAANAAATTAACACTGGGAAGTTTTGCCACAGCTAGTTCTATCTAGAGGATAATTGCATATAAGAAGATCATCAATTCGCTTGAGGAGTTGTTTGATTCAAAATCAGGAGAAAGTTAGTTAATCAAGAGGATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACAACATACACCAAGGTGTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCCAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTGTAATCGATGGTAGGAGAGCTAATTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCGACACCAAAGCATGGAGGAGGAGGGAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCGGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCAGGATTACACTTACCCTACGAGCTACTACAATGTGTATGGAGGAGCAGCAGCACAATACCCAGTTTATGGAAGTGGAGCAGGAGGGATGATGACGGGTGCTGCAGCAGCAGCAGCGTTCTATCCATATCTTCAGTATGGAGAAGGGAGTGGTGGCAATGGTGCCACAACCGGTGGCTATACTTCAGGGCAGGGTTATGGTGTTAACTATCCACCTCATCAACTGTTTCAATATTCTCCCATTGCTTCAACTGGTGGCTATTATGGAACACCCATCTCTCTTGCACCTTCCCCTGCNTTGCAATCAGGCCCCCCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01141	74866	81007	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001141s00037774.1	PF00076.17	RRM_1	18	73	4.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	76.665
SRR1783600	control	74.528
SRR1783602	moderate drought stress	81.255
SRR1811619	moderate drought stress	77.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	78.641
DRR006520	Root Summer glycyrrhizin high producing strain	78.099
DRR006521	Root Winter glycyrrhizin high producing strain	34.536
DRR006522	Root Winter glycyrrhizin high producing strain	33.996
DRR006523	Root Summer glycyrrhizin low producing strain	60.371
DRR006524	Root Summer glycyrrhizin low producing strain	58.670
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.921

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	136.211
SRR2868004	Drought Stress (root)	120.558
SRR2967015	Control (root)	140.588

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.864
SRR9715740	Leaf	21.095
SRR9715741	Leaf	36.008
SRR9715739	Root	35.662
SRR9715742	Root	84.360
SRR9715743	Root	70.977

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.097
SRR8749028	MeJA induced 9h	10.905
SRR8749029	MeJA induced 9h	4.058
SRR8749030	Uninduced	5.253
SRR8749031	Uninduced	6.943
SRR8749032	Uninduced	3.132

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	164.231
SRR8400027	Control - Root	165.168