Gene detail

Gene detail information of Glyur001140s00032336.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06250.1	3.00E-17	FAR1-related sequence 7
NR	XP_007208966.1	5.50E-45	hypothetical protein PRUPE_ppb019935mg [Prunus persica]
Swissprot	tr\|Q9M8J3\|FRS7_ARATH	7.00E-18	Protein FAR1-RELATED SEQUENCE 7
trEMBL	tr\|K7MC87\|K7MC87_SOYBN	6.00E-73	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G20510.2}

Sequence

Transcript Sequence

>Glyur001140s00032336.1
ATGGAGATTGTGAACATTGTCGCAACAGAGACAATTTCCACTTCAGAAAATAAAACGGTAATTCAGTCTGATTTTCATGATGATTCACATATTGCTATTGTAGAAGAAGAGGATGTTGAGCCTCATGTTGGAATGGAAGAGAATATTGAGCCTCATGTTGGAATGGAATTTGATTCCTTGGAAAAAGCTATAGAATTTTATAAATTATTTGCTAAGGCAAAAGGATTTGGGTTTCGTACTCGCTCACGCAAGAATAATTATTGCATTTTGGTATGTGTTAAAGAAGGTGAACTTCCGCTGAAAAGTGGTAAAAATGATGGCAACACAGAAAAAGCAAAAGCGAAGAAAAAATGCTCAACTATGAGCATGGGATGTCAAGCATCACTTATTGTGTCAAAGGAAAAGCATCGAGACATATGGATTATAAAATCTTTTGACAATAACCATAATCATGTCATGGCAAAAGGTTTACCTACGGGAAAGGTTGCTACAATGTTTAACGATAGTGGTTTAGCCTTTTCTAATCGGGACTGTTGGAATCATATGAGAAATATTCGAATGAAGAATTTGGATGTTGGAGATGCACAAGTTGTTTTTAATTATTGCAAACACAAGCAAGCTGAAAATTCTAATTTTTTCTATGCTATACAATGTGATGATGATGCTAGAATGGACGAATCTGAGACATCTTTTATATGGTTATTTGAGACTTGGCTTGAGGCAATGAATGGAAAAAAGCCAAATTCAACTTTCAAGCGTGAGTTGAAGAGATGCATTCGAGAATCACCAACTACAAAGGATTTTGAAGATGATTGGCAACGAATAATGGATGTGTACAAGTTACAAGAAAATGAATGGCTTCAAAGGTTGTTTGATATTAGAGAGTCATGGATACCGCGTTGGACAAAAGAAGCCAATACATATATTGAGGTTATTGATACCAATACTCAGAGTCATGATTCAGATATTTTGAGAAGTATGCATGTGCAACAACAGTTTAAGAAATTTTCTGACTTGGCTAAAATATCAGAAGAAGCATACAAGTTTATTATGACAGAACTTGATCGCATTTATAACATAGCTGCTACAAAAGGGATCGAATTGTTTGATGCAAATGAAGCTCTTATAGAGCCACAACAACAAAATTTGATAGCTGACACATTTGAAAGTGTTTCAAATTTCAATATCAGAGACCCACATGTATCACAAACAAAAGGTAGGAAAAAAGATTCTAACAAAGTGCCTCCAACAGGAAGGCATAAAAGTGGTCTTGAAATGTCAGTTAATAAGTCATTAGTTAAAAGGAGAGCATGCAAGTCATGTGGAGAATATGGTCACTATCAATCAACTTGCCAAAAAAAGGCATCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01140	71406	73676	+

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001140s00032336.1	PF03101.10	FAR1	65	154	8.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.175
SRR1811619	moderate drought stress	0.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.123
SRR2868004	Drought Stress (root)	0.072
SRR2967015	Control (root)	0.036

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.044
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.007
SRR8749029	MeJA induced 9h	0.020
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.065
SRR8400027	Control - Root	0.103