Gene detail

Gene detail information of Glyur001140s00032327

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	1.00E-38	disease resistance family protein / LRR family protein
NR	XP_003627996.1	0	Receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	1.00E-29	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9M0G7\|PXL2_ARATH	1.00E-37	Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor)
trEMBL	tr\|G7LIA8\|G7LIA8_MEDTR	0	Receptor-like protein {ECO:0000313\|EMBL:AET02465.1}

Sequence

Transcript Sequence

>Glyur001140s00032327.1
ATGGTGAGACGATTTTGCTCCCAAAGTGCACTCCTTTCTCTATTGCTACCATTTGCAATCATTTGCAATTTGGTAACATGCGAGGAGTTGAAGCAGCCCTCCTGCAACAATAAGGACAAGCAAATACTCCTCTGCTTTAAACATGGACTCACTGATCCATCAGGCATGCTGTCAACATGGTCCAACAAAGAAGATTGTTGTGAGTGGTTAGGAGTTCAGTGTGACATCAATGGCAGAGTCACAAATCTAAGTCTCCCTTGTTTCACACATGATTCTGTCAAGGGCATCAGCAAGAACAAAACACACTGCCTTGCAGGTGAATTCCACCTTTCTTTACTTCAACTTGAATTTTTGAACTTCCTGAATTTGAGCAACAATGACTTCAAAGCTATACACTTGCCATTGGATTGCCACAACTTGTCACTTGTTAACTCCTCCTCCAATCTTGCATATCTAGACTTGTCATTTAATGAGAATCTGGTGATGAATGATTTGAGATGGCTTATTCGTCTATCATCCTTAGAGTATCTCGACTTGGGTTCTATTGATCTCCACAAGCAAACTCAATGGCTTCAGATATTGACTATGCTTCCTTCACTCTCCGAGTTACACTTGTCTAGTTGCTTACTTGAAAGCGCTAGCCCATCTCTTGAATATGCCGCCAATTTCACTTCACTTGAATATCTTGATCTTTCTGGCAACGATTTCTTCTCTAAATTACCCAGTTGGATATTCAATCTAAGTGGTCTTTCTTATTTGAATCTTGAAGAAAATCGTTTCCTTGGCCAAATACCGAACACTTTATTGAATCTTCGAAATTTGCATTACTTGCTATTGGGAAGCAACCAGCTGAGTGGACCAATTCCAAACTGGTTAGGCCAACATGAAAGCCTCCGCTATCTAAGAGAATTCATTTACTGGTCCTATTCCCACACAACTTTGGGGAATCTATCATCCTTGATAGTCTTTGATGTCATCTCAAATGANTTGACCGGTAGCCTTCCTGAAAGTTTGGGGCAACTCTCGAATTTAGAAGGTTTGGGTGTTGGACATAATTCTCTTTCTGGAGTTGTGTCTCATAGAAATTTTGCCAAGCTCTCAAAGTTACAAAAATTGTGGTTGGCTTCACCCTCCTTCAACTTTGATTTTGATCCCCATTGGATTCCACCTTTTCAACTTCAACTACTTAACTTGAACTACGTAGATCTTAAACTTCTTCCATGGTTGTTCAAACAAACATCTCTCAAAACTCTAGGAATTTTCCAATCCTCATTTGCGACTATATTTCCAGACAAGTTTTGGAGTTGGGCAGCTGATCTTGATTTCCTTTCTTTAGGCGACAATTCCAATATGAATTGGGACATGTCAAACGTGTTGTTGAACTCTGAAGTGATATGGCTCGAAGGAAATGGTTTGAGAGGTGGCCTTCCTCGATTAACTTCAAATGTGAGTGTTTTTGTGATAAGTGGAAACAATTTGACTGGATCTCTTTCTCCTCTCTTGTGTCATAATAATATGATGGGGAAAAGCAAACTACAACTCTTAGCTGTCTCTTCTAACTTTTTATCTGGAGGGCTCACTAACTNCTGGGCAAATTGGAAATCTCTGCTCCATGTTGGTCTAGGGAGCAATAATCTAACAGGCATGATTCCTCACTCAATGGGTTCCTTGTCCAATCTTTTATCATTACATCTTGATGATAACAAGTTGCATGGAGAGATACCCATTATACCAAATTGGCTTGGACAAGATGTGAAAGCTCTCCGGTTGAGATCGAATGAATTTAGTGGTGATATTCCTCTACAAATATGTCAGCTTTCTTCTCTCATGGTGTTGTATGTCGCAAACAATAGATTATCAGGAACAATACCCCACTGCCTAAATAATATCACTGCCATGGTTTTGAACAACGCTTCACAAAGTGGCCAATTCAGTATTATTACTACAGTTGCAGGTGTCATATTTACAGTTGGTCTTCAATTGCTAGCGAAAGGAACCCAGCTTCAGAGCTTTCCAGCTCTTAGTTATATCGGCAATCCAGAGCTTTGTGGAGCTCCACTTATTAAGAATTGCACCCATGACGAAGCACCCAAGGACACTAAATTGAATGGAGATGATGAGGAGCTATTGGAGTGGTTCTACATGGGCATGGGAGTTGGATTTGCCATAAGCTTCTGGGTAGTTTGTGGTTGCCTCCTCTTCAAAAGGACATGGAGGCATGCTTACTTCAGATTTGTTGATCAAGTGAAAGACAAACTTTATGTCAAGCTAGGTGCTCTTATAGGTGATGCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01140	1875	6192	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001140s00032327.1	PF08263.7	LRRNT_2	36	75	1.40E-11
Glyur001140s00032327.1	PF13855.1	LRR_8	224	284	5.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.437
SRR1783600	control	0.460
SRR1783602	moderate drought stress	0.201
SRR1811619	moderate drought stress	0.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.047
DRR006520	Root Summer glycyrrhizin high producing strain	0.046
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.021
DRR006523	Root Summer glycyrrhizin low producing strain	0.168
DRR006524	Root Summer glycyrrhizin low producing strain	0.192
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.631
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.859

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.238
SRR2868004	Drought Stress (root)	0.177
SRR2967015	Control (root)	0.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.849
SRR9715740	Leaf	12.116
SRR9715741	Leaf	11.726
SRR9715739	Root	0.000
SRR9715742	Root	0.487
SRR9715743	Root	0.201

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.108
SRR8400027	Control - Root	3.468