Gene detail

Gene detail information of Glyur001139s00033883

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G48520.1
NR	XP_004498116.1	PREDICTED: LOW QUALITY PROTEIN: HAUS augmin-like complex subunit 3-like [Cicer arietinum]
trEMBL	tr\|V7C6R3\|V7C6R3_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW25058.1}

Sequence

Transcript Sequence

>Glyur001139s00033883.1
CGTTTTTTCAAAAGCACATAAGCGGCAGGAGGAAGGAGGAAGAAGAAGCGAGAGATCAGAAAGGATCATTGTTCCAATTTTCCTCCGTCGAAGAAGCAGTGAAGAGAAAGAGAAATGAGCGGTGCGAGACTGTGCGCATTGCTTGGAGAATTGGGTTACGAAGGAATAGGAACAGGAACAGGATCGGAGGCATTGGACCCTGACAGCTTCGAGTGGCCTTTCCAATACGAAGACACTCGCCCCATCCTCCACTGGATCTGCTCCACCCTCCGTCCCTCNAACATCCTCTCCCTCTCCGAACTCTCCCAGGAGGCAACTTTGGCATATAAACAGGAAGCTGGGGATTTGCNAAGACAGCTAAGGCATCTTCAGTCTCAGTTCGACATGCTCTCTGGCCAGGCGTCGACTTTGACGCAAGGAAGGCGAGCACGCGTTGGTGCCACTTCTGTTGTTAATGGACACCTCACAACAATAGATGATAGCATTTCGGTCAGAAATTTACAGATGAATGCAGTTCTTGGAAGAATTGCTTCCACAGCAGAGGAGTTGGCTCATTACCATTCGGGAGATGAAGATGGTATATATTTGGCATACTCAGACTTTGGCCAATTCTTGCTTGGAGACTCATCTTGTCTAAAAGAGCTAAATCAGTGGTTCGCTAAGCAACTAGACACAGGTCCATTCCGACTTGTTGCTGAGGAGGGGAAATCTAAATGCTCTTGGGTGAATCTTGATGACATCTCAAATAACTATGTCAGAGATTTAGAAAAATCACATCATCAACGTGTATNTGAGTTGCAACGGCTTCGCTCAATATTTGGAATAAGTGAAAGACAATGGGTGGAAGCGCAAGTTGAGAATGCCAAGCAGCAGGCCATTTTAATGACTCTTAAATCACAAGTATCATCAGATGAAGCTCACATTCATCTTGATCTTCATTCTCTTAGGAGAAAGCATTCCGAATTGAAAGGAGAACTTTCAAATCTTTATAACCATGAAGAAAAGCTGCTATCAGAGACTATTCCAGATTTGTGCTGGGAGCTAGCTCAACTCCAAGACACATACATTTTACAAGGTGATTATGATTTGAAGGTCATGCGCCAAGAGTACTACATTAACCGGCAGAAAGCNTTCATAAACCATCTCATCAATCTGCTTGCCAGGCATCAGTTCTTAAAGATAGCCTGCCAATTAGAAAAGAAGCACATGCTTGGAGCATATTCATTGCTTAAGGTTATTGAGTCTGAGCTGCAAGCATACTTGTCTGCAACTGAGGGACGAGTGGGTCGTTGTCTGGCCCTTATCCAAGCTGCATCCGATGTTCAAGAACAGGGGGGAGTACATGACAATACTCAAGCTGCACCGTCAACATATGTATCAGCACCCGGCATTGTCCAACAAATATCAGCTCTCCATTCAGATTTGATGACCCTTCAGTCAGACCTTGAGAATTCTCTTCCAGAAGACAGAAATAGATGTATTAATGAATTGTGCAATCTTATTCAAAGTATGCAGCAACTGCTCTTTGCATCTTCGACAACAGCCCAGCCAATCCTGACCCCTCGGCCGTTGATGAAAGAGCTTGATGAAATGGAAAAGATTAACGCAAAGCTCTCTGCTTCCGTGGAAGACGTGACACTAGAGCATGTCAAGAAGAATGAGATTGTGAAGCATCATTCACAAGAAATTGGACTTCAAAGGCGAGTCTTTGTGGACTTCTTTTGCAATCCAGAGCGGTTGAGGAGCCAAGTTAGGGAACTCACTGCAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01139	30028	43504	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0051225 spindle assembly

cellular_component
GO:0070652 HAUS complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001139s00033883.1	PF14932.1	HAUS-augmin3	34	69	3.60E-09
Glyur001139s00033883.1	PF14932.1	HAUS-augmin3	67	250	4.40E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.055
SRR1783600	control	12.087
SRR1783602	moderate drought stress	12.257
SRR1811619	moderate drought stress	12.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.154
DRR006520	Root Summer glycyrrhizin high producing strain	12.177
DRR006521	Root Winter glycyrrhizin high producing strain	14.398
DRR006522	Root Winter glycyrrhizin high producing strain	13.634
DRR006523	Root Summer glycyrrhizin low producing strain	8.611
DRR006524	Root Summer glycyrrhizin low producing strain	8.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.711
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.523

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.829
SRR2868004	Drought Stress (root)	14.433
SRR2967015	Control (root)	16.116

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.906
SRR9715740	Leaf	7.849
SRR9715741	Leaf	9.644
SRR9715739	Root	3.009
SRR9715742	Root	9.990
SRR9715743	Root	9.663

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.879
SRR8749028	MeJA induced 9h	12.729
SRR8749029	MeJA induced 9h	11.005
SRR8749030	Uninduced	4.576
SRR8749031	Uninduced	2.687
SRR8749032	Uninduced	3.008

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.452
SRR8400027	Control - Root	25.403