Gene detail information of Glyur001138s00028222 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44740.1 | 1.00E-70 | cyclin p4;1 |
| NR | XP_007139676.1 | 4.17E-137 | hypothetical protein PHAVU_008G049600g [Phaseolus vulgaris] |
| Swissprot | tr|O80513|CCU41_ARATH | 2.00E-102 | Cyclin-U4-1 |
| trEMBL | tr|V7B2A9|V7B2A9_PHAVU | 2.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:ESW11670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01138 | 50178 | 51670 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001138s00028222.1 | PF08613.6 | Cyclin | 34 | 145 | 1.60E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.441 |
| SRR1783600 | control | 2.461 |
| SRR1783602 | moderate drought stress | 0.857 |
| SRR1811619 | moderate drought stress | 0.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.574 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.644 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.181 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.177 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.179 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.180 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.116 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.288 |
| SRR2868004 | Drought Stress (root) | 8.414 |
| SRR2967015 | Control (root) | 9.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.669 |
| SRR9715740 | Leaf | 0.475 |
| SRR9715741 | Leaf | 0.103 |
| SRR9715739 | Root | 0.153 |
| SRR9715742 | Root | 0.202 |
| SRR9715743 | Root | 0.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.067 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.477 |
| SRR8400027 | Control - Root | 2.825 |