Gene detail

Gene detail information of Glyur001138s00028219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20930.1	8.00E-70	SNARE-like superfamily protein
NR	XP_003552475.1	2.03E-100	PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Glycine max]
trEMBL	tr\|I1N439\|I1N439_SOYBN	8.00E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G48290.1}

Sequence

Transcript Sequence

>Glyur001138s00028219.1
TATATCCATGCACACCAGAACACTGTCTACTACAGTTCCTTCCTTCCTCTTTTACAAGCCTGTTAGTTCATTCCCTCAATTCGGTGGGTGCGGGTGCAGCGAGAGCCAGGTAGACCGTGATCGGCCTCGGCACTCTGCCGGAGAAAAATGATCGTCTGCGTCGCCGTCGTCGGTCACCAGAACAATCCGCTGTACATACAGAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATCGTCCATTGCTCGCTCGATGTGGTCGACGAGCGAGTGAACAATCCTAAAAAATCTGGACCGATGCTGAATGAGACGTTTCTAGGACTGCTTTATCCTATTGAAAATTACAAAGTCTATGGATATCTGACTAATACAAAGGTGAAATTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCAGATGTAAGAAATTTTTTCAGGAGGTTCCATGCTGCATATGTAGATGCTGTTTCAAATCCATTCCATGTGCCAGGTAAAAAGATAACATCCAGAACTTTTGCAGAAAGAGTGAGCACAATTGTCAAGTCATTTGGTTTGAATTCGGCTGGGTGAACATCTGACACCGGTGTAAGTCCGATCCTTTGTTGATATCTGGCACAAAACTTTTTTTTTTAATCATTTTTTGGCTTGTAATTTTAGTATTCCATAGGAATTGAATTTCGTTGTGGTAAAATGCTTAGGAACATTTTGAATAGAGTTTTACATTATTGTTCAATATATTTTACCTTTAAATTTACTAAACTTGAAGGTAAATTTATATATTATCATACTCTAAACATGTAACGTACAAGTTAGATGAGATATCCCATTCATACTTGTTGCTTTGGCGTGAGATATGATGAGTGGGGTTCTAGTGTGCTTGGTGCATGTAATCTACAAGTAATAACAGGGTTTTTAGATGACAGTGGTGGAGAGAAAATTGAGAGTCATGATGGAAAAAAAAAAAATAGAGACAGATGATGCCATGGTGTGGGGCTTTTCCTTGTATGATTTATGCTGTCCTGGAATGGTTGGGAGGTAGGATATTTATTGGAGTGGCTTTTGGGGTGGGGGGTGTTTTTGGTTGGCTGTGTCTTCTTTGTGATACTTGCTGCTAGGCATGGTAGGAAAGGGCACATAGCGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01138	39847	43720	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006888 ER to Golgi vesicle-mediated transport

cellular_component
GO:0005622 intracellular

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001138s00028219.1	PF04628.8	Sedlin_N	7	135	8.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.077
SRR1783600	control	13.173
SRR1783602	moderate drought stress	12.842
SRR1811619	moderate drought stress	12.718

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.248
DRR006520	Root Summer glycyrrhizin high producing strain	30.005
DRR006521	Root Winter glycyrrhizin high producing strain	36.134
DRR006522	Root Winter glycyrrhizin high producing strain	34.798
DRR006523	Root Summer glycyrrhizin low producing strain	27.925
DRR006524	Root Summer glycyrrhizin low producing strain	27.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.511

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.810
SRR2868004	Drought Stress (root)	33.108
SRR2967015	Control (root)	37.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.522
SRR9715740	Leaf	18.317
SRR9715741	Leaf	20.055
SRR9715739	Root	29.549
SRR9715742	Root	18.881
SRR9715743	Root	20.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.771
SRR8749028	MeJA induced 9h	18.374
SRR8749029	MeJA induced 9h	20.301
SRR8749030	Uninduced	12.638
SRR8749031	Uninduced	7.002
SRR8749032	Uninduced	17.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.701
SRR8400027	Control - Root	54.482