Gene detail

Gene detail information of Glyur001138s00028216

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G38510.5	ATPase, V1 complex, subunit B protein
NR	XP_004492897.1	PREDICTED: V-type proton ATPase subunit B 1-like [Cicer arietinum]
COG	NP_127436.1	V-type ATP synthase subunit B [Pyrococcus abyssi GE5]
Swissprot	tr\|Q43432\|VATB1_GOSHI	V-type proton ATPase subunit B 1
trEMBL	tr\|G7KSI7\|G7KSI7_MEDTR	Archaeal/vacuolar-type H+-ATPase subunit B {ECO:0000313\|EMBL:AES80476.1}

Sequence

Transcript Sequence

>Glyur001138s00028216.1
CATCAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAGATCAACACACAACACACAGGGTTTTTGCTTCAAGTTTCAAAAATGGTTGTGGCTCTAAACATTCATGATGTGGAGGATGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGGGTTGCTGGACCATTGGTTATTCTTGAGAAAGTTAAGGGACCTAAGTATCAAGAGATTGTTAATATTCGCTTAGGAGATGGAACTACTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACCCCTGTATCGATGGACATGCTTGGCCGCATCTTTAATGGTTCAGGAAAACCTATTGATAATGGTCCACCTATATTACCTGAGGCTTACTTGGACATATCAGGAAGCTCCATCAACCCTAGTGAGAGAACCTATCCAGAAGAGATGATACAGACAGGAATATCTACAATCGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCTGCTGCTGGTCTCCCCCATAACGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGATTAGAGAAATCTGAGAATCTTCTTGAGGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTAGCATATGAATGCGGCAAGCATGTTCTTGTGATACTTACAGATATGAGTTCTTATGCNGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTCGCAACAATATATGAACGTGCTGGAAGAATCGAGGGGCGAAAAGGATCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGCTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCGCTGTCTCGATTAATGAAGAGTGCCATTGGTGAGGGAATGACACGAAGGGATCATGCCGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTTGAATTCTTGGACAAGTTTGAGAGGAAGTTTGTCGCCCAAGGAGCTTATGACACCCGCAACATCTTCCAGTCTCTAGATCTTGCATGGACTTTGCTTCGGATCTTCCCCCGCGAGCTTCTTCATCGTATTCCGGCCAAGACTCTTGATCAGTACTACAGCCGAGATGCCGGTAATTGATGATACACATAGCAAGCTTATATATACCTTAGTCACATGCTCTCATTCAGCTTGTAATGATCGTGGCGGTTATTCATTCATTTCTTAGCTTTCTCATCCAAACAGTCCATATTTCTTCTATTCAGCTCATATTATGTTATATATAATAAAGGTTTGAGTGCCTCATATTTTGATTTCTTCAGTTAGTCAGAATGAAGACCCCATAGATATTTTATTAATTCCCTGTGCCATTTTTTTTCCTGGGGTGGTGAGGATATTAGTTATTACTTGTTTGAGATGGCATTAATTGCTTCAGTATCTGAGTTACCTTGTAATTTGATTCTTCAGGATATTTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01138	20363	26460	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015991 ATP hydrolysis coupled proton transport

GO:0015992 proton transport

GO:0046034 ATP metabolic process

cellular_component

GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain

GO:0033180 proton-transporting V-type ATPase, V1 domain

molecular_function

GO:0005524 ATP binding

GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001138s00028216.1	PF02874.18	ATP-synt_ab_N	24	90	7.30E-13
Glyur001138s00028216.1	PF00006.20	ATP-synt_ab	146	377	1.90E-61
Glyur001138s00028216.1	PF00306.22	ATP-synt_ab_C	395	480	9.10E-16
Glyur001138s00028216.2	PF02874.18	ATP-synt_ab_N	24	90	7.30E-13
Glyur001138s00028216.2	PF00006.20	ATP-synt_ab	146	377	1.90E-61
Glyur001138s00028216.2	PF00306.22	ATP-synt_ab_C	395	480	9.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.852
SRR1783600	control	27.316
SRR1783602	moderate drought stress	19.296
SRR1811619	moderate drought stress	19.033

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.982
DRR006520	Root Summer glycyrrhizin high producing strain	26.569
DRR006521	Root Winter glycyrrhizin high producing strain	13.514
DRR006522	Root Winter glycyrrhizin high producing strain	13.022
DRR006523	Root Summer glycyrrhizin low producing strain	24.555
DRR006524	Root Summer glycyrrhizin low producing strain	24.379
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.543
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.065
SRR2868004	Drought Stress (root)	53.420
SRR2967015	Control (root)	46.502

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.584
SRR9715740	Leaf	32.533
SRR9715741	Leaf	39.637
SRR9715739	Root	18.846
SRR9715742	Root	20.700
SRR9715743	Root	21.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	76.349
SRR8749028	MeJA induced 9h	50.153
SRR8749029	MeJA induced 9h	59.642
SRR8749030	Uninduced	34.917
SRR8749031	Uninduced	33.310
SRR8749032	Uninduced	35.919

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.930
SRR8400027	Control - Root	54.432