Gene detail information of Glyur001138s00028215 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17800.1 | 3.00E-63 | Predicted AT-hook DNA-binding family protein |
| NR | XP_003624255.1 | 3.80E-147 | AT-hook DNA-binding protein [Medicago truncatula] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 6.00E-48 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|G7KSI4|G7KSI4_MEDTR | 3.00E-147 | AT hook motif DNA-binding family protein {ECO:0000313|EMBL:AES80473.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01138 | 16267 | 17076 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001138s00028215.1 | PF03479.10 | DUF296 | 86 | 201 | 1.80E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.201 |
| SRR1783600 | control | 21.206 |
| SRR1783602 | moderate drought stress | 22.588 |
| SRR1811619 | moderate drought stress | 22.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.993 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.417 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.308 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.310 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.115 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.210 |
| SRR2868004 | Drought Stress (root) | 86.830 |
| SRR2967015 | Control (root) | 96.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 52.676 |
| SRR9715742 | Root | 22.840 |
| SRR9715743 | Root | 31.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.045 |
| SRR8749028 | MeJA induced 9h | 21.213 |
| SRR8749029 | MeJA induced 9h | 18.677 |
| SRR8749030 | Uninduced | 17.451 |
| SRR8749031 | Uninduced | 11.756 |
| SRR8749032 | Uninduced | 10.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.596 |
| SRR8400027 | Control - Root | 19.065 |