Gene detail information of Glyur001137s00022787


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G34480.11.00E-94Ribosomal protein L18ae/LX family protein
NRNP_001238728.12.47E-126uncharacterized protein LOC100306174 [Glycine max]
Swissprottr|Q9ATF5|RL18A_CASSA8.00E-12260S ribosomal protein L18a
trEMBLtr|C6SYA5|C6SYA5_SOYBN9.00E-12760S ribosomal protein L18a {ECO:0000256|PIRNR:PIRNR002190}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold011378190283932-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001137s00022787.1PF01775.12Ribosomal_L18ae61283.50E-58


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control243.720
SRR1783600control244.598
SRR1783602moderate drought stress180.266
SRR1811619moderate drought stress180.231

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain452.337
DRR006520Root Summer glycyrrhizin high producing strain449.172
DRR006521Root Winter glycyrrhizin high producing strain199.831
DRR006522Root Winter glycyrrhizin high producing strain197.018
DRR006523Root Summer glycyrrhizin low producing strain341.384
DRR006524Root Summer glycyrrhizin low producing strain345.059
DRR006525Leaf Summer glycyrrhizin high producing strain170.915
DRR006526Leaf Summer glycyrrhizin high producing strain171.048

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)768.074
SRR2868004Drought Stress (root)461.801
SRR2967015Control (root)383.188

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf266.115
SRR9715740Leaf242.612
SRR9715741Leaf214.633
SRR9715739Root213.588
SRR9715742Root240.922
SRR9715743Root224.318

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h581.760
SRR8749028MeJA induced 9h243.781
SRR8749029MeJA induced 9h321.484
SRR8749030Uninduced47.372
SRR8749031Uninduced21.843
SRR8749032Uninduced39.439

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root523.602
SRR8400027Control - Root475.486

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved