Gene detail

Gene detail information of Glyur001137s00022783.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06410.1	1.00E-105	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_004486037.1	0	PREDICTED: zinc finger CCCH domain-containing protein 34-like [Cicer arietinum]
Swissprot	tr\|Q84W91\|C3H32_ARATH	4.00E-141	Zinc finger CCCH domain-containing protein 32
trEMBL	tr\|G7IPY9\|G7IPY9_MEDTR	0	Zinc finger C-x8-C-x5-C-x3-H type protein {ECO:0000313\|EMBL:AES64207.1}

Sequence

Transcript Sequence

>Glyur001137s00022783.1
AAAGAAGCCCCTTGCAGACATATAGAAAGATCAAAATAATCAGAACGCTCTTTTGTGTTGAAACTGAAAGGGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTGTCGGGTCCGCCCGCGTGACTTATAGAGATATAGAGAGAGAAAGGAACCCCCCCGGAGGAAAATCCAACCCCCCCATTTTCTCTCTCTACTTTCTCTGTGGGAAGGAACGCCCATTTGATCGGAGCTTCCCTCTCATTCTCCGTCGCGACTTCTGTGCAATCAGCTCCGTTCTCCGGTTCGGGTCCGTGCAATGGAGCAGTATGGCCGGTCCAGTGAAGGCTCCCGGTCTGATCCGTCGCCGGAATGGACCGGACCCGGTGGCCAAACCGGCCTCGATGAGGCTGTGTGGCAATTGGGGTTGGGTGCTGCTGAGGAATCGTACCCGCAACGGCCAGATGAGGCTGATTGCACCTACTATTTGAGGACCGGCTTCTGTGGCTTTGGCTCTCGCTGTCGGTTCAACCATCCCCGTGACCGTGGCGCGGTTATTGGAGCTGCTAGGACTGCAGGGGACTATCCAGAACGTGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGATCATGCAAATTCGGTGCGTCTTGCAAGTACCACCATCCTAGGCAGGCAGGAGGCATTGCTAGCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAAAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGTAAGTTCGACCACCCACCTCCTGCTGGTGTCCAAATTCCAGCACCATCTGCAGTTCCCCCAGNTTCACCTTTATCTGTACCGGTACCTTCACAATTATATCCAACTGCTCAGCNTCCATCTGGACCTTCATCACAACAAATTGGTGTACTGGTCGCAAGGCCACCTCTACTACCTGGTTCGTTAGTCCAGGGCCCCTATGGACCTGTGGTGGTGTCCCCAACCATGGTCCCTATTTCTGGCTGGAGTACTTATCAGGCTCCTGCAACAAGCCCTGTACTTCCGTCTAGTACTCCACCTAATGTTGGTTCAGCACAGCTTTATGGGATAACCCAGCTACCTTCATCAGCAACTGCTTATGCTGGACATTATCAACCTTCTGGTTCCTCAGTTGGTCCTTCAAGCGGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGCCTAATCAACCAGACTATCAGTATTACTCAAAAACAGGGGAGTTTAAATTTGGTCCATCATATGGGTATCACCAATCANCAGACACGAGTGCACCAAGAATGAATGTTGTCCTTAGTCCTGCAGGTCTTCCTCTGCGTCCGGGGGCACCACCTTGCACTCATTATGCACAGCGCGGAGTATGTNAGTTTGGTCCTGCATGCAGATTTGATCATTCTATGACGTCACTTAGTTATAGTCCATCTGCTTCTTCCCTGGCTGAGATGCCAGTTGCACCCTATCATGTGAGTTCGTCTGTTGGTATTCTTGCTCCATTTTCTTCATCATCAGAGTTGCAGCGCGAACTTACCACAGGATCCAGCACAGATTCTGTTCCATCCAGAATCCCTTCATCAACGAGCACATTGACTGGATCAGTTGGCTCGACTTTGTCGTCTGGTGGCCCTGTTTCTCAATCAAGCACTCAACCATCTGCTCAAAGTTCCAGTCCTTTAGCAGCTGCCAATACCACAACAAGTAGCAATGTCTCTCATACCTCAAGCTAAGCAATGTGAATGCATACCTCATCATTACTCCTTTTTATCTCGATTCTTCAACCGGATATCATTATTCAAGGAGGTCCTCAAATAGGGTTTTTTTTCCCTGTCATCTCAGTTCCACATTCAGGTCTAGCACACTTCACACTAATTATCTTTATGTTCATATAATCTTTTTGTGGCCATCCCTTTGATCTTTGAATAAACCATGGCCAACCTTGAGAATTTTAGCAACCCATACAACCCCCTTGCTTTAGAATAACTCCTAAAGAATCTGCAATTCCATTGCGCACATGTCCACCCACATCTCCAATTTTTGGAGTTTGTTGTGCTTATTTATGCTTCAATCTTTTTTGATATGAGAACATTCTGTCCAGACTTTCATTGACCATGTGTTTATGCCTCTTCACCCGAACCCTTTTGAATGTGGGAACAATTTTCNATTTCTGCTTTAAAAGTGCTTTTCAATACTTTTCCCAACTTGTATCTATAGGGTTTACTGTGAAGAGAAGTAATCAGGAGACTACATGAGGCTTCACATTNTTTTTTATATGGTTTTAGATACAAAGTGATGTTGTGACAATCGAAAACTTGACTTGGTACTTCAATTTATTACAGAATACGTATATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01137	71410	76614	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001137s00022783.1	PF00642.19	zf-CCCH	49	74	4.00E-09
Glyur001137s00022783.1	PF00642.19	zf-CCCH	95	119	1.20E-08
Glyur001137s00022783.1	PF00642.19	zf-CCCH	140	165	3.30E-09
Glyur001137s00022783.1	PF00642.19	zf-CCCH	353	377	7.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.814
SRR1783600	control	18.842
SRR1783602	moderate drought stress	16.257
SRR1811619	moderate drought stress	16.008

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.326
DRR006520	Root Summer glycyrrhizin high producing strain	13.070
DRR006521	Root Winter glycyrrhizin high producing strain	7.154
DRR006522	Root Winter glycyrrhizin high producing strain	7.022
DRR006523	Root Summer glycyrrhizin low producing strain	12.145
DRR006524	Root Summer glycyrrhizin low producing strain	11.994
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.790
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.939
SRR2868004	Drought Stress (root)	6.142
SRR2967015	Control (root)	7.601

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.064
SRR9715740	Leaf	6.170
SRR9715741	Leaf	6.758
SRR9715739	Root	9.957
SRR9715742	Root	12.397
SRR9715743	Root	12.221

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.967
SRR8749028	MeJA induced 9h	14.814
SRR8749029	MeJA induced 9h	9.382
SRR8749030	Uninduced	5.271
SRR8749031	Uninduced	2.220
SRR8749032	Uninduced	3.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.801
SRR8400027	Control - Root	13.710