Gene detail

Gene detail information of Glyur001137s00022782.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18560.1	3.00E-42	Integrase-type DNA-binding superfamily protein
NR	XP_007154243.1	1.27E-100	hypothetical protein PHAVU_003G102500g [Phaseolus vulgaris]
Swissprot	tr\|Q6J9Q2\|ERF86_ARATH	6.00E-53	Ethylene-responsive transcription factor ERF086
trEMBL	tr\|V7C7U9\|V7C7U9_PHAVU	5.00E-101	Uncharacterized protein {ECO:0000313\|EMBL:ESW26237.1}

Sequence

Transcript Sequence

>Glyur001137s00022782.1
ATGTCCATTTCTAGAACCAACTCAGATGCTTCCCTCAAGCACAATCAGAACCAAGTGAATTTGTCTATCCTCCAACGAAACAATAATATATCTTCTTGTGGTGAGAGAAGAGGGAGGAGAAAGCAATCAGAACCAGGGAAGTTTCTTGGGGTAAGGAGGAGACCTTGGGGTAGATATGCTGCTGAGATTAGAGACCCTACAACAAAAGAAAGGCATTGGCTTGGAACCTTTGACACTGCTCAAGAAGCTGCTCTCGCTTATGACAGAGCTGCTCTGTCCATAAAAGGCATCAAAGCTAGAACCAACTTCATATACTCTGATCATGACACCAATCTTCACAATGCCAATGTTGTTCTCACTACTACTACTCCTGTGGATGATGTTCAAGCTCTCTTACCATCTCCACATCACTTCCTCACCAACAACACTCACACCACACAACCAACCAACCAAAATAGCCTGTCTCAGTCTGATACAGACACTTCTTTTCACAATATTGAGAAACTACCCTCCCACTTGAATAACATCAATGACATGTGTCCTGAAACTGCATATGGTTCAACTCAGGAGGAGGATGGTAGTTTCTTCTTCTCCAAGGATTCTAATTCGGGCTATCTGGAATGCATTGTTCCTGGCAATTGTTTCAGACCACCTGTGATTTCCGGCACCACCAACAGTTCAAACTACTCGGGGAAGAGCAATGCCAGTAGTGCTTCTTCAAGTGATATTCACCAAAAGGTTAGCTCCATGCAGGGCCAAATCCAATCACATTTTGATCACTACACTGCATTCTCTCAAGAAGCCTTAAGCAGCATGCAAACAGTGGCCTCTAACTTTTCTGTTTTTTCTTCCACAACCCCAAGTGAGAACACTAGTCAGCAATCATGGGATTATAGCAAATACAATGAACTTTCAGCTATTTTTAACAATCCATTAAGGAATAATAATGAAGATGGAACATGTGTGCATGCAGTATGCCCCATCGCCACGTCTCCGTCTCAGTCTCAGTCTCAGTCTCAGGCTGATTATCCAATATCACTTCCTCCTTTTGGGGATGTTGACTTGGGATACACCCTCTTGTTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01137	67354	68439	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001137s00022782.1	PF00847.15	AP2	47	96	5.90E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.733
SRR1783600	control	0.645
SRR1783602	moderate drought stress	0.386
SRR1811619	moderate drought stress	0.384

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.100
DRR006520	Root Summer glycyrrhizin high producing strain	0.132
DRR006521	Root Winter glycyrrhizin high producing strain	0.080
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.203
DRR006524	Root Summer glycyrrhizin low producing strain	0.204
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.292
SRR2868004	Drought Stress (root)	0.254
SRR2967015	Control (root)	0.336

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.121
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	2.428
SRR9715742	Root	0.267
SRR9715743	Root	0.644

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.065
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.056
SRR8749030	Uninduced	0.062
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.108

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.156
SRR8400027	Control - Root	0.372