Gene detail

Gene detail information of Glyur001137s00022780

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18570.1	6.00E-142	GTP1/OBG family protein
NR	XP_003593960.1	0	GTPase obg [Medicago truncatula]
COG	YP_005441141.1	9.00E-90	GTPase Obg [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|Q8L7L0\|OBGC_ARATH	0	GTP-binding protein OBGC, chloroplastic (Precursor)
trEMBL	tr\|G7IPZ3\|G7IPZ3_MEDTR	0	Obg family GTPase CgtA {ECO:0000313\|EMBL:AES64211.1}

Sequence

Transcript Sequence

>Glyur001137s00022780.1
ATGGCGACTTCAATCTCATTTTTTTTCTCTCCCATTGTCGTAGTAGCTGGCTCCAACACACGCAATCCTCGCAGTCGCAGCGGACCCACTCGCACCAACACCAAACATCTCTCAAACCCTAACAAACTGAAGAAGCAAAGTGCCACGCACTTTTTTTCGCCGGAACCGGCGGTGCTCCAGGGCGGCGACGCCACCACCTACACCCGTCTCCCCCTCCGGGAAGACTACTCCTCCCCCTTTTTTTTTTCCTCCTCCGAAATCAAGCTCTCCGATTCAACTCCATTTTTTTATCAATTTCTCCACAACCTCCAAGAAGAAGAAGAAGATTTTTTTGAAGAAATCATCGATGGCAATTTCGAAGAGTCTGAATTTTTTTTAGCCTTTGGGTTTATGCATGGAGAGAATGAGGATATTTTTTTTTGGGGAGAGTTTTTGAGTGAGNAATCGGAGGGTGAGGTTTTTTTTAAGGGGTTGCCGGCCGTGATGCGGTGTTTCGACCGGGCCAAGATATACGTGAAGGCCGGTGACGGAGGGAACGGGGTGGTGGCTTTCCGGCGGGAGAAGTACGTGCCGATGGGGGGACCGTCGGGGGGAGACGGAGGGAGAGGTGGTGACGTGTACGTGGAGGTGGACGTTTTTTTGAATTCGCTGTTGCCGTTTCGGAACAGATTGCATTTCTTTTTTTGGAGGGGGTCCCACGGGCAAGGAAGGAAGCAGTGTGGGGCCAAGGGAACAGATGTGGTGGTTAAGGTGCCTCCCGGGACGGTTTTTTTTGAGGCCGGTCGGGATGATGAGGAGGAGGTGCTGTTGTTTTTTTTGTTTCCTGGACAGAGGGCGTTGCTGTTGCCAGGTGGTTTTTTTGGAAGAGGGAATGCTTCTTTCAAGTCTGGGACTAATATTTTTTTCAAGATTGCTGAGAATGGTGAACTTGGTCCTGAAATGTGGTTGGAGTTAGAACTCAAGCTGGTTGCAGATGTTGGTATAGTTGGTGCTCCGAATGCGGGGTTTTTTTCACTTTTGAGTGTTGTTAGTGCTGCAAGGCCAGAGGTTTTTTTTTATCCCTTTACAACACTGCTTCCCAATCTGGGCGTTGTTTTTTTTGACTATGATTCATCGATGGTAGTGGCAGACCTTCCGTTTTTTTTTGAAGGAGCACACCGAGGTTTTGGTTTAGGTCATGATTTTTTTCGACACACTGAAAGGTGTTCCGCCCTGGTACATGTTTTTTTTGGTTCATCACCGCAGCCAGATCTTGAGTTTGATGCAGTTTTTTTAGAGCTGAAGCTATTTAATCCTGAACTTGCTGAGAAGCCTTATATAGTTGCTTATAACAAAATGGATCTTCCAGAAGCATATGAAAACTGGGAATCTTTCAAAGAAAAGTTGCAATCTCGTGGGATTTTTTTTTTTTGTATGAGCGCTGTCAAAAGGGAAGGTACTCATGAAGTTATCTGTGCTGCTTACGAGCTTTTGCGTAAAAGTAAAGAAGACAAGGAGGAATATGAAGATGGAAGTTTTTTTGTAAACTTGAACCATGTAGCTCATGCAGTACAGAAGCTTTTTTTTGCATCTATTAGTGATTTTGAGATTCTTCATGATAACAGTTCAAATGTTTGGCGTGTAGTTGGATCTGGATTGCAACGTTTTTTTTTTATGACAAATTGGCGGAAGGCGACACAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01137	48715	52859	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000287 magnesium ion binding

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001137s00022780.1	PF01018.17	GTP1_OBG	166	322	4.20E-48
Glyur001137s00022780.1	PF01926.18	MMR_HSR1	325	445	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.588
SRR1783600	control	0.552
SRR1783602	moderate drought stress	1.140
SRR1811619	moderate drought stress	0.869

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.700
DRR006520	Root Summer glycyrrhizin high producing strain	0.679
DRR006521	Root Winter glycyrrhizin high producing strain	0.382
DRR006522	Root Winter glycyrrhizin high producing strain	0.770
DRR006523	Root Summer glycyrrhizin low producing strain	0.189
DRR006524	Root Summer glycyrrhizin low producing strain	0.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.789
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.724

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.873
SRR2868004	Drought Stress (root)	1.108
SRR2967015	Control (root)	1.077

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.656
SRR9715740	Leaf	6.465
SRR9715741	Leaf	3.669
SRR9715739	Root	0.161
SRR9715742	Root	0.951
SRR9715743	Root	0.657

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.521
SRR8749028	MeJA induced 9h	0.654
SRR8749029	MeJA induced 9h	0.765
SRR8749030	Uninduced	0.778
SRR8749031	Uninduced	0.814
SRR8749032	Uninduced	0.385

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.688
SRR8400027	Control - Root	1.512