Gene detail

Gene detail information of Glyur001137s00022779.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07900.1	3.00E-31	Mitochondrial transcription termination factor family protein
NR	XP_003593962.1	9.72E-104	hypothetical protein MTR_2g019810 [Medicago truncatula]
trEMBL	tr\|G7IPZ5\|G7IPZ5_MEDTR	4.00E-104	Transcription termination factor family protein {ECO:0000313\|EMBL:AES64213.1}

Sequence

Transcript Sequence

>Glyur001137s00022779.1
ATGATTTCTTCAAAAAAATCTTCTTCTTCTTCTTGGAGGTTGTGGTGGCGTCGCCGCCCTGGAGCACCGCCGGTTCCGGCGAAAAAAATGGGTCCGCTGCGACTGCGAGGATTGCGTGTGTTGGAGCCAGCTACTACGACAATGGGAGAGAAAAAAAATGAGATTGAAGTCGCCATTTTCGCCACACGTGTGCAAAAGCCCATTGCAGCTGTTCTGTACTCCTATGTTTGGATGGCGGTTTTTGGAGGGGGAAAGGAGGAGAGGGGACGGTACTCTGCTGCTCCAACCTGCCCTACCCCATCATCAGAACCACCTTTACGATCCCCACACCATCACCACCACTACCCTCTTTCTCTCTTCTTCTCCTGCAACATTTTTCCTCCTCTTCTCAAGATGAAGACCAATCTTTCACCATCAACTACCTCAAACCGCTTCCAAACTCTCCACCCAGTCCTCGCCCTTTTCAGAAGCTATGGCTTCTCAGATACCCACTTATCTGGGATCATCCGAGCCTGCCCCAAACTCCTCGCTTTCGATCCCAACAAGACCATTCTTCCGAAGCTCAACTTCCTCATCTCAAAGGGTGCTTCAAGTTCCGACCTTGTGCACATCGTGACAAAAAACCCCAGGTTCTTATATCAAAGCTTGGAGAATTCCATGGCCCCATTGTTGCTTGAGAATGGGGTCCCTGAATCGAAGGTTGCTTTTATGCTTCGTAATTGGTCTTACACGGTCATTGCAAATCCGGATGTATTTAAGAAGGCTGTGGAGGAAGTGAAGGAATTGGGGTTCAACCCCAACACAACGGTTTTCATTGTAGCAGTGCGTGCTAAGATCATGAGAAAGTCTCTGTGGGAAAAGAAGGTTGATTTGTATAAGAAATGGGGTTGGTCTGAAGAAACTATTGCTGCAGCATTTGTGAGGTATCCATGGTTCATGCTGGCATCTGAGGATAAGATTGAGGCAGTGAATGAGTTTTTGGTCAAACACATGGGTTGGGAGTCTCCTGATCTTGCCAAATACCCAAAGAGGGTTATTCCCAGGGCACTTGTGTTGCAGTTTCTTCAATCCAGGGGTTTGATTAAGACTGCTAAATTGGCCGGGCCTTTCAAAAAATTTGTGAATTGCTTTGAGGAGGAAGCTTCTCAGCTGTTGAAGCTGTATAAAGAGAAGAGACATCTTACAAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01137	45751	49058	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001137s00022779.1	PF02536.9	mTERF	153	221	2.20E-10
Glyur001137s00022779.1	PF02536.9	mTERF	285	379	1.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.098
SRR1783600	control	5.537
SRR1783602	moderate drought stress	7.647
SRR1811619	moderate drought stress	6.917

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.234
DRR006520	Root Summer glycyrrhizin high producing strain	5.662
DRR006521	Root Winter glycyrrhizin high producing strain	4.701
DRR006522	Root Winter glycyrrhizin high producing strain	5.122
DRR006523	Root Summer glycyrrhizin low producing strain	7.640
DRR006524	Root Summer glycyrrhizin low producing strain	6.818
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.005
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.511

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.798
SRR2868004	Drought Stress (root)	9.108
SRR2967015	Control (root)	7.758

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.636
SRR9715740	Leaf	4.470
SRR9715741	Leaf	2.700
SRR9715739	Root	5.727
SRR9715742	Root	5.744
SRR9715743	Root	4.310

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.357
SRR8749028	MeJA induced 9h	8.281
SRR8749029	MeJA induced 9h	4.755
SRR8749030	Uninduced	2.953
SRR8749031	Uninduced	1.415
SRR8749032	Uninduced	2.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.199
SRR8400027	Control - Root	6.026