Gene detail

Gene detail information of Glyur001137s00022778.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07900.1	8.00E-33	Mitochondrial transcription termination factor family protein
NR	XP_003593962.1	5.56E-73	hypothetical protein MTR_2g019810 [Medicago truncatula]
trEMBL	tr\|G7IPZ5\|G7IPZ5_MEDTR	2.00E-73	Transcription termination factor family protein {ECO:0000313\|EMBL:AES64213.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01137	35743	37965	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function

GO:0003690 double-stranded DNA binding

GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001137s00022778.1	PF02536.9	mTERF	37	164	4.40E-12
Glyur001137s00022778.1	PF12899.2	Glyco_hydro_100	166	209	8.60E-06

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.953
SRR1783600	control	0.943
SRR1783602	moderate drought stress	0.890
SRR1811619	moderate drought stress	0.909

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.763
DRR006520	Root Summer glycyrrhizin high producing strain	0.867
DRR006521	Root Winter glycyrrhizin high producing strain	1.256
DRR006522	Root Winter glycyrrhizin high producing strain	0.932
DRR006523	Root Summer glycyrrhizin low producing strain	1.919
DRR006524	Root Summer glycyrrhizin low producing strain	1.778
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.231
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.159

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.798
SRR2868004	Drought Stress (root)	1.462
SRR2967015	Control (root)	1.297

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.124
SRR9715740	Leaf	0.085
SRR9715741	Leaf	0.050
SRR9715739	Root	0.068
SRR9715742	Root	0.199
SRR9715743	Root	0.121

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.127
SRR8749028	MeJA induced 9h	0.313
SRR8749029	MeJA induced 9h	0.373
SRR8749030	Uninduced	0.424
SRR8749031	Uninduced	0.164
SRR8749032	Uninduced	1.051

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.071
SRR8400027	Control - Root	1.197