Gene detail

Gene detail information of Glyur001137s00022772

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18590.2	0	Galactose oxidase/kelch repeat superfamily protein
NR	XP_006597533.1	0	PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Glycine max]
COG	YP_004232947.1	2.00E-10	Kelch repeat type 1-containing protein [Acidovorax avenae subsp. avenae ATCC 19860]
Swissprot	tr\|Q9MA55\|ACBP4_ARATH	2.00E-71	Acyl-CoA-binding domain-containing protein 4
trEMBL	tr\|K7MAJ9\|K7MAJ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G10310.4}

Sequence

Transcript Sequence

>Glyur001137s00022772.1
GCTTCCAGCTCATGCTCATTGTTCTGTTTGATGTTGTTGTTGGGATTTTCGATTCGGTGCCGCTTGGAATTCCTTTTTAATTTCCTAGCAACTTTCTTAGTAACCAAACAGCTTGGACTCGTTGCTCAGGTGATATTTGAGCTTTGAAGAAGAATAACATGTTCGGGCTCTCTCGTCGGCACATGAAACTTGGCAGCAGATTGAAGGTTCAGCTTTCTGACACCACACAGGGAACTAGAAGTCCCCTCAGGCACCCCAAGCGAAATGGAAACTCCAATGGTGATGGAGTTGCACTTGCAGGGACAAGTGGCCATTCTGAGGAAATTGATTGCCAATTTTCGTCTGCTGCTCCTGAGATAAGTACTTGTACATCAGGCAGTTCAGAGAACTGGATGGTTTTGTCAATTGCAGGGGATAAACCCACTCCTAGATCCTATCATGCAGCATCTGTCGTTGAGAATAAGATGATAGTGGTTGGTGGTGAATCTGGGAACGGATTGTTAGATGATGTGCAGGTGCTAAATTTTGACACATTTTCATGGACCACAGTGTCATCCAAGCTATACTTGTCACCAAATAGTCTGCCACTGAAGATTCCAGCTTGCAAGGGTCATAGTTTGGTTTCTTGGGGGAAAAAGGCACTCCTCATTGGAGGGAAAACAGAACCAGGAAGTGACAAAATTTCAGTATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAAGCAAAGGGAGACATACCGGTTTCTCGCAGTGGTCACACTGTTGTTCGGGCTAACTCTACTTTAATATTGTTTGGGGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTGCATATGTTTGATCTCAAGTCCTTGACATGGCTNCCACTTCACTACACGGGAACAGCACCTTCTCCAAGGTTCAATCATGTGGCATCTCTTTATGATGGTAAAATTCTTTTTATATTTGGAGGAGCATCAAAATCTAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACGATGGCATGGTCAAGAATAAAGGTACGCGGTTTCCATCCATCACCAAGAGCGGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATCACTGGTGGTGGAAGCGGGAAGAAACGACATGGAGAGACTTTGATATATGATATTCTAAAANGTGAATGGTCTGTAGCAATTGCATCACCTCCGTCTTCTATCACTACCAACAAGGGTTTTAGCTTGGTACTCATACAGCACAAGGAAAAAGACTTTCTTGTTGCATTTGGGGGATCCAGAAAAGAGGCATCAAATCAGGTGGAAGTGTTGATAACAGAAAAAAATGAACCAGCTCCGGGAAGACGACGAACTCCTACCAAAGGTCTAGGATCTATACTTCATGAAAAACATTCATTATCCACTGGATTGGCCTCTCAACTCAGAAATGACTCTTCCCAACGTTTCATCGACTCTGTTGCTCGACAAAATCTAGCATCTGCAATTGAACATGGTTCTGAAAGGAAATCTCTGTCAGAAGCCCTGCTTGTAAAAGATTCCAGTTCTCTCCCTACCAACATCTCCCTTCGCAGGCAAATTGATCACGGCGAAGAATTCAATGTAGATGTAAGGATTGACAAGCAATCGGAGGATGAAAGTTCTTTCCCTCAGGCAGCAGATCACAGAACAAATCAAATTGACCCCGGAAATCAGATGAACATAAGTGGAGCCAAAATCAACATGGAGGAACGGGTTTTGGCATCTGGACGTTCAAATAGAAGAAATCTTGGTTTTGGAAACCCCATGCCAGAAAATGAGGATGTGTCATTCCCAGAAAACAGTAAATCAGGATCACTATCTACTGCTTCAAATATATATCATCATTATGAAGCTAAGGTGGCTTCCCTAATAAGAAAGTTTGGCATTCTGGAGGGACAATTGGGAGCTGCATTAGCAAGCAGAGAAGCTGCTGAGAAAAGCNTAGCAGCTGCTTTTAAGAGCAGGCAGGAAATGGAGAAGAAACTGTCTGACACACTGAAGGAGATGGAATTACTGAGAGAGAAGCTGACTGGTGCAGAGTTAGCACAAGAAGAGGCCAACAACCTATCCAACACTGTCCATTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTCAAGGCGATTTTAGATGATACACAGAAGGAACTGCACTCAACAAGAGGAGTTCTTGCAGGAGAAAGAGCAAGGGCATTCCAATTACAGGTTGAAGTTTTTCATCTCAAACAGAGACTGCAATCAATGGAAAATCGAGCACCTACTCCTAGGAAACCTTTTCATGTGTAGTGAGGTGTCCTGAATGGTCAATGATAACAATCAAATTCNGCAAAAAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01137	11649	17504	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001137s00022772.1	PF13418.1	Kelch_4	90	133	3.50E-09
Glyur001137s00022772.1	PF13418.1	Kelch_4	200	249	3.60E-09
Glyur001137s00022772.1	PF13418.1	Kelch_4	250	292	1.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.649
SRR1783600	control	0.682
SRR1783602	moderate drought stress	1.441
SRR1811619	moderate drought stress	1.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.725
DRR006520	Root Summer glycyrrhizin high producing strain	0.679
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.046
DRR006523	Root Summer glycyrrhizin low producing strain	0.327
DRR006524	Root Summer glycyrrhizin low producing strain	0.284
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.903
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.486
SRR2868004	Drought Stress (root)	3.954
SRR2967015	Control (root)	4.466

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.394
SRR9715740	Leaf	4.972
SRR9715741	Leaf	2.656
SRR9715739	Root	0.249
SRR9715742	Root	0.739
SRR9715743	Root	0.417

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.114
SRR8749028	MeJA induced 9h	6.189
SRR8749029	MeJA induced 9h	4.041
SRR8749030	Uninduced	2.024
SRR8749031	Uninduced	2.493
SRR8749032	Uninduced	0.960

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.796
SRR8400027	Control - Root	2.428