Gene detail

Gene detail information of Glyur001135s00033671.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G16850.1	telomerase reverse transcriptase
NR	XP_007148874.1	hypothetical protein PHAVU_005G021500g [Phaseolus vulgaris]
Swissprot	tr\|Q9SPU7\|TERT_ARATH	Telomerase reverse transcriptase
trEMBL	tr\|V7BV12\|V7BV12_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW20868.1}

Sequence

Transcript Sequence

>Glyur001135s00033671.1
ATGGCTAGGAAAAGGAAAGGCCGCAGGAGCAGAGTCCCAGGCGTGTTGTGGCGCGTATTCGGGAACAGAGCACGAACCCTCTCAGAAACGATCCCATCGTTGCTCCCTCCTCCGCCTCCCTCCTCCGATCTCTGCCACTGCAAGGGCACCCTTTGCCTTGGCTGCACCCGCGACGCCGCCTCCTTCCTCCTCAGATCCGGTGACCCCTCTCATTACCGCAAACTCCTCTTTAACTGCTACGTCGTCGTTTCCGATAACCCCCCTCCTATNCCCTTCTTCATCCCCCACTCCAACTGCCCCCAAAATGAGATTGTGAAGAGCATCATTGAACTGATGTCGTATCGAAGGGATCCAGCCTCTTACAATGTGTTGTGCTCTGGTTTTGATAGGAGTAAATGTTCAAGCGCTATTGTGGAGCTTTTATCCTCTGCATCATGGTGTCTTCTGTTGAGTAGGGTTGGAGATGATTTNATGGTTTACCTGCTAAAGTATACATCAATATTCTTGCCAGCTCCCCATGGAAAACACTACCAGGTGGGAGGTCCTCCGATCAGTCGTCTTTGCTTTGATATGTTGTGTTCATCAAATATCAATGGTCCTGTTGGCTTTGCAAATAATCTTGGTTTGANGGGTAAGTCTTCAATGCAACTAAGCAGGCATCATGGGAGCATGAGTTATGATGTCAGTGTCTCTGAAGGTCCTAAGTCAATAAGAANTGCTACTGTTATAAGGAAGTCAGAGTCAGAAGGGAAACCAGACTTGAATTCTATTACAACTAGGCCTGGAAAGCGATCTAGGCCATTTAGTTGGCAGAGGCTTAGATGCAAAAAGCAGAAGCAATCAACCTNTGAAGAAAGCAATCTAAATGCACATTGCAATTTGCTTCCTACAAATACAGATTGCTTGCATGCTAATTTGCAGCCTGACAGCACTTGCTTAAACTGTCACGAAAAGATGTTGTGGCTCTGTTCTTGCTGTTTAATCTTGCAATCTCTTCCAACTGTTCCTAAGTGGACTGATGTCAAAAGGAAATCCATCTTTTATAACCTGGAGTCTTCACTCTCGGTTCTTCCGAAGAAACATATTTTATATTCCTTAAGGCCAAATTTGGCTTGTTCGAAGTATCTCATTGGCAATATTTTTGGCTTCTCAGATGTAAATGCCAGTGCCCAGCCAATGCCATGTTCCCACANCAATGCTTCGTGTCTCATTGAATCTGCATGCCTGTATCATTCTCTTGTTAAGTGGTTTAAGCATCTCATTCGTAGGACACNGTGTTGCCAGCTTGCAAAGTTCTTGGATAAGCATTGTGTTGTTCGATCATTGGAACAACATGCAATTGGAAAATCGAGCTCCAGACTTAAGGACAATGTATCCGGGACAAATGTACATGAGAAATCTCGGGAGTTTGATACTAANCATTGCACAGATACTGTGGAAGTAATAGATTCACAGCTTGAGGCAGTTAAGTCATGCTGCTCAAAAAGTCAAGTGGTATCTTTCATATGGGCTGTTTCTCGCAGTTTACTTCCTTCTGAATTATTAGGTACTCCTTCTAACTGGAGAATAATGAGGAGAAATATTTCCAAGTTCATACACCTACGGAGATATGAAAAATTCCCTTTAAAGCTATGTTTGCATGAACTGAAAACATCAAGGTTTCCATTCCTTTCAAATAAATATTTCTTGAGTAGTCAAAATGCTTGCATTCTAAAGTATTTGGAAGGACATGATAAAGTCCTTCATAAAGAATTCAGAAATTGGAACAATGNTGTACATTGTATCAAACGTAAGCTTTTGGAGAAGTGGATCTTCTGGTATTTCTCTTCTCTGGTTGTGCCTTTGGTGCAAGCAAACTTCTATGTTACTGAAAGTGAGCAAGGGAAACAAGATATTTACTATTATCAGAAACCAGTTTGGGAGAAGTTGACTAAAAGCACTATTGCTTGCTTCAAAGACTGGAGATACAGTTACCTGGATGATGTGGCTCTACATAATATTCTCAGAGGTAGACCATTTGGATTTTCNAAGCTCAGACTTCAACCTAAAGAAAATGGAGTAAGGATGGTGGCAAATCTTAAAGGTTCTTCAAGATTGCCACTGCTTGTGTCCACTATGGGAGTTCAATATTGGAAAACTNGAAGGAAAGAAAAACACCAGAAAATCAAATTTGAACATTATCCGTCTGTGAATTCTGTTCTTNGTGATGCCCATACTATTCTAAAAGGAATTCAGTTCAAGGAGCCTCAGAAGTTAGGTTCATCAGTATTTGACTACAATGATGTTTACAAAAGACTATGCCCATTTTTGGTTGGCCAGAAGAAAGGATTGGCATCTATGTCTAGTTTATTCATTGTCACTTCTGATGTTTTGAAAGCATTTGATTCTGTTGATCAGGACAAGCTGCTTGGCATAATGAAAGATGTTCTATGGAAAAGTGNATATTTTCTTAAACAGCATGAACAAGTTATTTGCACGAAGAAATCTTTGTGGGTTCAAAAGCAATTTACAATGCAGGATGAAAGTAGCAACACTGGTCANACACGATTTGGATTATTTCCTTCCTTTCGTTCCCGGCATGCTGTCTTTGTGAACCAGGAGTGGCAGAAACATGTGAAAAAGAAAGTGCTATTTTCATATATTACAGAGCATGTGAAGCACAATGTGTTGCGGTTTGATGGAAAATTTTATTTGCAAGGTGTTGGTATTCCCCAGGGAGGGGTTTTGTCATCTTTGCTCTGCTCCTTATATTATGGACATTTGGAGAGACATGTAATATTTCCATTCCTTGAAAAAGCACTTGAATCTGGCAGTTGCAAGGAGAATAGTTCTGTACACGACAACAGTGATGATAATGTCTCATCACCATGTTACTTGCTAATGCGATTTANTGATGATTTTCTTTTTATATCAAACTCAAAGAAGCAGGCTGCTAGCCTTTTCTCCAGACTGCAAAGAGGATTTCGTGATTACAACTGCTACATGAATGAGAAAAAATTTGGTGCAAACTTTGACNTAGATCAGATATCAGGTTCCTCATTGAACANGGTTTGTGCGGGCAAAGATGGTGCTACTTCATTTGTTCGATGGAGTGGNCTTCTTATCAATTGCTCCACCATGGAAATTCAGGCTGATTACACAAAGTACTTGAATAACCATTTAAGCTCGACACTCACGGTTTGCTGGCAAGGGAAACCAGGCATTCATCTGAAGGAGAAGCTGCGTCTCTTTCTAAGACCTAAATGCCATCCTTTATTCTTCGATTCAAACGTCAATTCAGCAGCTGTTGTCAGATTAAATATTTATCAAATGTTTTTGATATCTGCAATGAAGTTTCACTGTTATATTCGTGACCTCTCATTTGTCTGCAAGCTTCACAGAAGATATTGTTNAGACATTATTCAGAGATCTTTGAGATACATGCACCTGCTAATAAAGAGAAGGATGTGTTCCATGCGTCTTAATTCCNGTATCCGGCCAATTCTCAAGTTGGAGAAGGGAGAAGTGGAATGGCTTGGGCTTCATGCTTATATACAGGTGCTAAAGAGAAAGGAATCGCGTCATAAGGAGTTGCTGGCAGTTTTGAGGTCAAAGATTTTGTCACATAGAATGTCTGGGAGTGTGTCACCTGAACTAAAGTATGCAATCAATGCTGAAAACTCTTCTTTGATCTGGGACATCAACACCTGGCTTTGA

Protein Sequence

>Glyur001135s00033671.1
MARKRKGRRSRVPGVLWRVFGNRARTLSETIPSLLPPPPPSSDLCHCKGTLCLGCTRDAASFLLRSGDPSHYRKLLFNCYVVVSDNPPPXPFFIPHSNCPQNEIVKSIIELMSYRRDPASYNVLCSGFDRSKCSSAIVELLSSASWCLLLSRVGDDXMVYLLKYTSIFLPAPHGKHYQVGGPPISRLCFDMLCSSNINGPVGFANNLGLXGKSSMQLSRHHGSMSYDVSVSEGPKSIRXATVIRKSESEGKPDLNSITTRPGKRSRPFSWQRLRCKKQKQSTXEESNLNAHCNLLPTNTDCLHANLQPDSTCLNCHEKMLWLCSCCLILQSLPTVPKWTDVKRKSIFYNLESSLSVLPKKHILYSLRPNLACSKYLIGNIFGFSDVNASAQPMPCSHXNASCLIESACLYHSLVKWFKHLIRRTXCCQLAKFLDKHCVVRSLEQHAIGKSSSRLKDNVSGTNVHEKSREFDTXHCTDTVEVIDSQLEAVKSCCSKSQVVSFIWAVSRSLLPSELLGTPSNWRIMRRNISKFIHLRRYEKFPLKLCLHELKTSRFPFLSNKYFLSSQNACILKYLEGHDKVLHKEFRNWNNXVHCIKRKLLEKWIFWYFSSLVVPLVQANFYVTESEQGKQDIYYYQKPVWEKLTKSTIACFKDWRYSYLDDVALHNILRGRPFGFSKLRLQPKENGVRMVANLKGSSRLPLLVSTMGVQYWKTXRKEKHQKIKFEHYPSVNSVLXDAHTILKGIQFKEPQKLGSSVFDYNDVYKRLCPFLVGQKKGLASMSSLFIVTSDVLKAFDSVDQDKLLGIMKDVLWKSXYFLKQHEQVICTKKSLWVQKQFTMQDESSNTGXTRFGLFPSFRSRHAVFVNQEWQKHVKKKVLFSYITEHVKHNVLRFDGKFYLQGVGIPQGGVLSSLLCSLYYGHLERHVIFPFLEKALESGSCKENSSVHDNSDDNVSSPCYLLMRFXDDFLFISNSKKQAASLFSRLQRGFRDYNCYMNEKKFGANFDXDQISGSSLNXVCAGKDGATSFVRWSGLLINCSTMEIQADYTKYLNNHLSSTLTVCWQGKPGIHLKEKLRLFLRPKCHPLFFDSNVNSAAVVRLNIYQMFLISAMKFHCYIRDLSFVCKLHRRYCXDIIQRSLRYMHLLIKRRMCSMRLNSXIRPILKLEKGEVEWLGLHAYIQVLKRKESRHKELLAVLRSKILSHRMSGSVSPELKYAINAENSSLIWDINTWL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01135	28607	40572	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11126	TERT, EST2	EC:2.7.7.49	HTLV-I infection	map05166

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003721 telomerase RNA reverse transcriptase activity

GO:0003964 RNA-directed DNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001135s00033671.1	PF12009.3	Telomerase_RBD	496	652	1.20E-35
Glyur001135s00033671.1	PF00078.22	RVT_1	781	1000	8.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.475
SRR1783600	control	1.586
SRR1783602	moderate drought stress	2.382
SRR1811619	moderate drought stress	2.317

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.451
DRR006520	Root Summer glycyrrhizin high producing strain	0.436
DRR006521	Root Winter glycyrrhizin high producing strain	0.274
DRR006522	Root Winter glycyrrhizin high producing strain	0.176
DRR006523	Root Summer glycyrrhizin low producing strain	0.900
DRR006524	Root Summer glycyrrhizin low producing strain	0.797
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.339
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.362

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.273
SRR2868004	Drought Stress (root)	2.901
SRR2967015	Control (root)	2.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.543
SRR9715740	Leaf	0.854
SRR9715741	Leaf	4.289
SRR9715739	Root	0.066
SRR9715742	Root	2.703
SRR9715743	Root	2.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.566
SRR8749028	MeJA induced 9h	7.704
SRR8749029	MeJA induced 9h	2.635
SRR8749030	Uninduced	1.436
SRR8749031	Uninduced	0.646
SRR8749032	Uninduced	0.454

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.969
SRR8400027	Control - Root	4.682