Gene detail information of Glyur001135s00033669 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62950.2 | 2.00E-11 | RNA polymerase II, Rpb4, core protein |
| NR | XP_006603445.1 | 8.13E-18 | PREDICTED: uncharacterized protein LOC100819072 [Glycine max] |
| trEMBL | tr|K7MSM7|K7MSM7_SOYBN | 5.00E-19 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G34191.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01135 | 14502 | 21164 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.773 |
| SRR1783600 | control | 1.238 |
| SRR1783602 | moderate drought stress | 2.880 |
| SRR1811619 | moderate drought stress | 2.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.006 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.865 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.077 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.121 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.171 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.014 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.029 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.886 |
| SRR2868004 | Drought Stress (root) | 3.173 |
| SRR2967015 | Control (root) | 3.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.558 |
| SRR9715740 | Leaf | 3.504 |
| SRR9715741 | Leaf | 3.080 |
| SRR9715739 | Root | 1.705 |
| SRR9715742 | Root | 1.681 |
| SRR9715743 | Root | 1.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.805 |
| SRR8749028 | MeJA induced 9h | 7.588 |
| SRR8749029 | MeJA induced 9h | 7.753 |
| SRR8749030 | Uninduced | 10.796 |
| SRR8749031 | Uninduced | 8.078 |
| SRR8749032 | Uninduced | 9.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.639 |
| SRR8400027 | Control - Root | 4.346 |