Gene detail

Gene detail information of Glyur001133s00027782

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39920.2	4.00E-38	HAD superfamily, subfamily IIIB acid phosphatase
NR	XP_003600852.1	3.95E-173	hypothetical protein MTR_3g070090 [Medicago truncatula]
Swissprot	tr\|O04195\|Y2992_ARATH	5.00E-65	Uncharacterized protein At2g39920
trEMBL	tr\|G7JAN9\|G7JAN9_MEDTR	1.00E-173	Acid phosphatase-like protein {ECO:0000313\|EMBL:AES71103.1}

Sequence

Transcript Sequence

>Glyur001133s00027782.1
GCATAACAAAGGAAAGGCACGTTGAAAAACAGAGGAAGCTTCCTTCGGAGAGTGACTCATTCAAGTACACTGGACAATGNCTAAATATATATCCTCATGGACTCTTTGTGATTCTTAGCATCCGAGTGAAATACACATCCTCGTATTTTCTCCCAGATTTTCTTCTGGGGCTGAGTAATGTCTTTCTCAGGTTATCCCTTTGATACTTGGAAGCAAACTGGAGGTGTTACTTGAACTTGATTATAAGTTAGCTTATATAGCTTGAAGCTATGTCTGCTTATGCCCATCAAATGCAGCAGCAGTACTCTGCAAGTGCAGTTAGTCTGTCAGATGATTCTGAGACAGCAAGCCGTTATGAGCTAGAATCAGGATTCTACATGACAGCTTTTACCGCNACAATCTTTATTGCTTCACTTGTCACTCTCGGAGTTTTATTAATTACTTTGCTGATTTCCTTGGCGATCATGCTGCAATCCTGTCAAAGTAAAAGTACCGGAATTGTTGAACTTCTGAATACAAATGATTATTACAGTTATTGCAGGGTGTATTCTCTGCATGCTGAGCTCAATAGCTTAGAAGGTTATGATCTTCCAAACATCTGTAGAGATCTGGCTACACATTATATCAAAGGAGGTCAATATGCTAGAGACTTGGATTTAATTGTGTCTATGATTGATGATTACTTCAAGAGTGTGAGACCTTCAGATGATGGTTTGGATGCGGTGTTGTTGGACATAGATGACATTGTTCCTCCGGATCCTTATTCTTCCAAGTTGTTTCACAGGTTTCATAATGGCAGCATTAGCAACTGTATCAAAGAGGCAAAGAATATAAAGCTCATGCTTGTTTTAAGATTATACATGGACCTTCAAGCTGGTGGATGGTCTATAATTTTGTTGTCAAGAGAGCCTGGAATATACCATAATGTCACCATTAATCATCTTGTTTCTGCAGGATTTAGAGGTTGGTCTTCCTTGATGATGAGGTATANTGATTATATATCTACCACTCACTTGCTTAAAGCAGAAGATTCAGATTCTACCAAAGGGAATGAGTACTTTTCTAGGCAAAGGAATGTGATACAGAAGAAGGGCTTCCATATAAAAAGTATTATAAGCAGCCATATGGATGCGTTGACTGCTCCAGATGCAGGAATACGAAANTTTTTGCTTCCAAACATTGTATGTGACAAGTTTGAGCAGCAGGTAGAGAGCATAGATTCTGGACATTAGTTTCATGAGTGTGGAACCGCGGTCAAATGGGCACACCGCGTGTTGGATGTGAAGCTCTAGTATGTAGCTTATGCGGTGGACTGCCTTGGGACGCGAGAATAGAGGTTTCCAAACGCTCGCTCCATCCATCAAGAAGACAGAATTGCTTTTAATTATTTAGGGTCTTATTCTCTGACACTAGATTTGTTTTTGCTATACATTCAACATCAATACTAAGAATGCACTCAGTATTCAGCTTTTTCTCAATTTTCTCTCCTATGTTCTATTGGATTATCCACATGCAGACTCTGAGAATACCTGAGTCTTAAAATATATCTTCACGTGAGGATATCTCGTGGTCTTAAAAACAAAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01133	57381	61023	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003993 acid phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001133s00027782.1	PF03767.9	Acid_phosphat_B	81	303	4.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.602
SRR1783600	control	7.551
SRR1783602	moderate drought stress	5.500
SRR1811619	moderate drought stress	5.505

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.593
DRR006520	Root Summer glycyrrhizin high producing strain	35.941
DRR006521	Root Winter glycyrrhizin high producing strain	1.334
DRR006522	Root Winter glycyrrhizin high producing strain	1.368
DRR006523	Root Summer glycyrrhizin low producing strain	27.491
DRR006524	Root Summer glycyrrhizin low producing strain	28.072
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.614

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.694
SRR2868004	Drought Stress (root)	4.794
SRR2967015	Control (root)	4.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.539
SRR9715740	Leaf	56.438
SRR9715741	Leaf	33.265
SRR9715739	Root	6.140
SRR9715742	Root	15.079
SRR9715743	Root	11.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.553
SRR8749028	MeJA induced 9h	4.241
SRR8749029	MeJA induced 9h	2.805
SRR8749030	Uninduced	1.014
SRR8749031	Uninduced	0.048
SRR8749032	Uninduced	0.225

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.958
SRR8400027	Control - Root	20.240