Gene detail

Gene detail information of Glyur001133s00027776

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55770.5	3.00E-87	GATA type zinc finger transcription factor family protein
NR	XP_004503222.1	4.68E-128	PREDICTED: pollen-specific protein SF3-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9M047\|WLI2B_ARATH	9.00E-109	LIM domain-containing protein WLIM2b {ECO:0000305}
trEMBL	tr\|T2DNC9\|T2DNC9_PHAVU	2.00E-128	Uncharacterized protein {ECO:0000313\|EMBL:ESW35498.1}

Sequence

Transcript Sequence

>Glyur001133s00027776.1
ATGCGTACAAGTGGAAGGAGAAAGAGAAATCTAAGAAGAAACACAGTCTCTGAAGCCGATCCAGTGTATTGGGCACTTGGAATTTGTGGTGAATTCAGATCTAAAAATTCAAAAGCAATGTCTTTTATTGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACGGTTTATCCCGTTGATCAGCTTTCTGCTGATGGCACTGCTTACCATAAAGCTTGCTTTAGGTGCTCTCACTGCAAAGGAACACTAAAGAGAAATCTAAGAAGAAACACAGTCTCTGAAGCCGATCCACTGTATTGGGCACCTGGAAATTGTGGTGAATTCAGATCTAAAAATTCAAAAGCAATGTCTTTTATTGGNACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACGGTTTATCCCGTTGATCAGCTTTCTGCTGATGGCACTGNTTACCATAAAGCTTGCTTTAGGTGCTCTCACTGCAAAGGAACACTAAAGCTGAGCAACTATTCCTCAATGGAGGGTGTTCTCTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGCATGGCACCTTCAGCAAGAACTTCCAGTCACCTGCAAAGCTAGCTGACAAGACGACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCAAGCATGTTTTCCGGGACACAAGAAAAATGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGCCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGTTGTCCTATAACTCCATCCAACTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCACTTCTCTCAGCTTTTTAAGGAGAAAGGAAGCTATAGTCATCTTATCAAGTCTGCATCAATCAAAAGGGCTGCAACATCTGTTCCTGAATCTTGAATGTTGGTGGTGCCTTCTATTGCCTTCACTATTTTTTTTCCAAATAAGAAAAAGGAGGAGGAAGAGAAGGAGGAGAAGATGTTTTGGTTTGTCAAGCAAGTGTTTGTATGTGTGGCTTTTTTTTCCCCTCTTCTTCTTATAATTGTTCTATTGTGACTTGATCCTTTTCTGTGATATTTACTTACATATGTGTGGCGTGCAAATCTTGTGTGATTTATTTATCCAATGCACATTTAGCAATGACTAATGAGAGAGTGATTTGCAAGATGTATCTTTCCAATTCGATGATGGAGCCTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01133	37891	42580	-

Gene family

Gene family	subfamily
Transcription Factors Family	LIM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001133s00027776.1	PF00412.17	LIM	49	86	4.20E-09
Glyur001133s00027776.1	PF00412.17	LIM	125	180	5.10E-14
Glyur001133s00027776.1	PF00412.17	LIM	223	278	2.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.916
SRR1783600	control	56.629
SRR1783602	moderate drought stress	49.664
SRR1811619	moderate drought stress	50.413

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.089
DRR006520	Root Summer glycyrrhizin high producing strain	55.595
DRR006521	Root Winter glycyrrhizin high producing strain	20.779
DRR006522	Root Winter glycyrrhizin high producing strain	20.666
DRR006523	Root Summer glycyrrhizin low producing strain	42.491
DRR006524	Root Summer glycyrrhizin low producing strain	42.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.970
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.352

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	99.992
SRR2868004	Drought Stress (root)	70.852
SRR2967015	Control (root)	70.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.660
SRR9715740	Leaf	22.779
SRR9715741	Leaf	13.547
SRR9715739	Root	45.114
SRR9715742	Root	41.204
SRR9715743	Root	36.739

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.773
SRR8749028	MeJA induced 9h	43.463
SRR8749029	MeJA induced 9h	31.025
SRR8749030	Uninduced	22.645
SRR8749031	Uninduced	9.636
SRR8749032	Uninduced	13.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.975
SRR8400027	Control - Root	79.774