Gene detail

Gene detail information of Glyur001132s00025477

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G14210.1	phytoene desaturase 3
NR	XP_006601863.1	PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic isoform X1 [Glycine max]
COG	YP_007108688.1	zeta-carotene desaturase, three-step phytoene desaturase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|P28553\|CRTI_SOYBN	Phytoene dehydrogenase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|I1MYC3\|I1MYC3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G00720.1}

Sequence

Transcript Sequence

>Glyur001132s00025477.1
CACAATCCAAATGAAAACCAGCTAGTGGCGTGGTGCCGTCTCCACCAACTGCTTCACTTTTCCTTCTCACACCTCCCACCACCATTACCCTTCGTCAATAGACTTCGTTTTTCACTCTCTTTNTGCAACCCCAAGCTGGGGTCAATGGCTGTGTGTGGGTGTATATCTGTGGCGAACTTGAATTGCCATGTTGGCACAAGCTCAACGAGAAACATATCCAAATTGGGTTCTCCNATGAACAATTCAGATGGCACAATCTCGTTATCATTTGGTGGGAGCGAGTCCATGGGTCTTAGCTTGAGGCTTGCTTCAACACTTGCGGCTAAGGGCACAAGGTTGAGGAGGAACCATGGTTCTTCTCCCTTGAGGGTGGTTTGCACCGACTATCCACGCCCCGAGCTTGAAAACACCGTTAATTTCCTTGAAGCTGNTTACTTGTCTTCCACCTTTCGTGCTTCTCCTCGTCCAACCAAACCCTTGAAGGTCATTGTTNCTGGTGCAGGATTGGCTGGTTTATCAACTGCAAAATATTTGGCAGATGCTGGTCATAAGCCTGTATTGCTGGAGGCAAGAGATGTTCTAGGTGGAAAGGTTGCTGCATGGAAAGATAAAGACGGAGATTGGTATGAGACTGGCCTACACATATTCTTTGGGGCTTACCCTAATGTGCAGAACCTATTTGGGGAACTCGGTATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAGTAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTCCTTCCCGCTCCATTAAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTGACCTGGCCAGAGAAAGTCCAATTTGCAATTGGACTTCTGCCAGCTATGCTTGGTGGACAGGCGTATGTTGAGGCTCAAGATGGTCTTTCTGTTAAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCAAAGGCACTAAATTTCATCAACCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCCCCCGAAAGACTTTGTATGCCAATTGTCGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTTAATTCACGCATTAAAAAAATTGAGCTAAATGATGATGGCACGGTGAAGAGCTTCTTACTAAATAATGGGAAGGTGATTGAAGGGGATGCTTACGTATTTGCAACTCCAGTGGATATTCTGAAGCTTCTTCTGCCTGACAACTGGAAAGGGATTCCTTATTTCCAGAGATTGGATAAATTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCAGTAACTTGTAAGGAATATTACAACCCAAACCAGTCTATGTTGGAGTTGGTTTTCGCACCAGCTGAAGAATGGATTTCGCGTAGCGATGAAGATATTATTGGTGCCACAATGTCTGAGCTTGCCAAACTCTTCCCTGATGAAATTTCTGCAGACCAAAGCAAAGCCAAGATTGTCAAGTACCATGTCGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCAAATTGTGAACCTTGCCGTCCCATACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGTGATTACACAAAACAAAAATATTTAGCTTCCATGGAAGGTGCTGATTCTGAGCTACTCGCTGCTCGGGGACAGAAAAGAATGGCTAAAGCAAGTGCTATTTAAACAAAAACAAGAATTAGAAGATAAATTCTGGTAGAGTACNGGAGCATCATTTCAACTCTGGCGTTATCTGTTCATACGAAGACAGGTTCAGTTCCCTGTCATATAGGCAAATATATTTAACGATGATATGTTGCAGCAAACGACAAGGAAAAGCCAATATGAGCAAATAGAAAGTCAATGACTCGTTCATTTTTTAGTGTGGCCAAAGAGCCCTTTGTTATCATCGTCCTCCAAGTCATGTTTGTAATAGAACTACGGGCATGTCACTGTTTTATCTTGTATACCCAGTTTTTATTTTATTTTATTTATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01132	36045	43723	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02293	PDS, crtP	EC:1.3.5.5	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process

GO:0016117 carotenoid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001132s00025477.1	PF01593.19	Amino_oxidase	169	599	1.90E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.062
SRR1783600	control	18.252
SRR1783602	moderate drought stress	16.103
SRR1811619	moderate drought stress	16.014

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.717
DRR006520	Root Summer glycyrrhizin high producing strain	16.914
DRR006521	Root Winter glycyrrhizin high producing strain	18.076
DRR006522	Root Winter glycyrrhizin high producing strain	17.356
DRR006523	Root Summer glycyrrhizin low producing strain	20.157
DRR006524	Root Summer glycyrrhizin low producing strain	20.315
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.250
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.114

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.380
SRR2868004	Drought Stress (root)	106.983
SRR2967015	Control (root)	95.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.695
SRR9715740	Leaf	78.101
SRR9715741	Leaf	79.425
SRR9715739	Root	10.560
SRR9715742	Root	19.046
SRR9715743	Root	15.930

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.174
SRR8749028	MeJA induced 9h	33.714
SRR8749029	MeJA induced 9h	14.942
SRR8749030	Uninduced	24.439
SRR8749031	Uninduced	15.651
SRR8749032	Uninduced	11.744

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.743
SRR8400027	Control - Root	42.106