Gene detail information of Glyur001132s00025475 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23700.1 | 2.00E-116 | Nucleic acid-binding proteins superfamily |
| NR | KHN44460.1 | 0 | 30S ribosomal protein S1, chloroplastic [Glycine soja] |
| COG | YP_001278578.1 | 4.00E-31 | RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1] |
| Swissprot | tr|P29344|RR1_SPIOL | 6.00E-22 | 30S ribosomal protein S1, chloroplastic (Precursor) |
| trEMBL | tr|V7D2N2|V7D2N2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01132 | 29651 | 34848 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001132s00025475.1 | PF00575.18 | S1 | 191 | 267 | 1.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.051 |
| SRR1783600 | control | 3.085 |
| SRR1783602 | moderate drought stress | 3.062 |
| SRR1811619 | moderate drought stress | 2.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.874 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.874 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.283 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.864 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.774 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 114.485 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 113.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.190 |
| SRR2868004 | Drought Stress (root) | 3.321 |
| SRR2967015 | Control (root) | 2.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.137 |
| SRR9715740 | Leaf | 84.607 |
| SRR9715741 | Leaf | 64.472 |
| SRR9715739 | Root | 0.568 |
| SRR9715742 | Root | 1.948 |
| SRR9715743 | Root | 1.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.694 |
| SRR8749028 | MeJA induced 9h | 5.232 |
| SRR8749029 | MeJA induced 9h | 3.507 |
| SRR8749030 | Uninduced | 3.034 |
| SRR8749031 | Uninduced | 0.929 |
| SRR8749032 | Uninduced | 0.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.043 |
| SRR8400027 | Control - Root | 4.021 |