Gene detail

Gene detail information of Glyur001132s00025470

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07880.1	3.00E-60	Immunoglobulin E-set superfamily protein
NR	XP_007163783.1	3.12E-120	hypothetical protein PHAVU_001G263700g [Phaseolus vulgaris]
Swissprot	tr\|Q9SFC6\|GDIR_ARATH	2.00E-85	Rho GDP-dissociation inhibitor 1
trEMBL	tr\|V7D047\|V7D047_PHAVU	1.00E-120	Uncharacterized protein {ECO:0000313\|EMBL:ESW35777.1}

Sequence

Transcript Sequence

>Glyur001132s00025470.1
TGGGAATACAGATACATGTTATAGTCTCAACGAGTTCAATCTGGACTCCATTGGCCATTACACCAAAGCAAACCATCTTCCAACCTTAGCAAACAGGGCTCTAAATTTGGCACTAGNTCGCACACCAAACTCTTGAACAAGGGCCTTTTCCTCTGCTTCAGGGTTCACACACTCTCTTCTCTGAGTCCGAGGTTGAAAAATGTCTGCAGCAGTGGGAGCTGTCTCCTCCACAACCAAGGACGTTTCTTACAACCCTCATTTAGAGGAAGAGCCCAAAAACAAAAGACCCGACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGTTGTTGGTTCTGGTGTGGAACCAGACAGTGATGGTGGTGCTGCCAATTCTGATGATGCTGAAGAAACTGAGGCAGAGGAAGATGATGATGACTCCAGGTTGGAATCTAACAGGGAATTGGATCTTGGCCCTCAAATTACCCTCAAGGAACAGCTTGAGAAAGATAAAGATGATGAAAGTTTGAGAAAATGGAAGGAGCAACTTCTGGGAAGTGTTGATATTTCTACCGTTGGAGAAAGCAAAGACCCAGAAGTGAAGATACAAAGCCTCACCATTACATCCCCAGATAGGCCTGACCTTACCTTGCCAATTCCATTCACTACTGATCCTAAGAAGAGTCTCTTCATCCTTAAAGAAGGAAGCCGATGCCGCATGAAGTTCACTTTCACTGTCTCCAACAACATCGTTTCTGGTCTCAAATACACCAATATTGTTTATAAAACTGGTGTTAGAGTGGGCAGCAGNAAAAAAATGTTGGGAACTTTTAGCCCCAAGCAGGAACCATATACATATGAATTGGAAGAAGAAACCACCCCTACTGGCATGTTCGCTAGGGGAACCTATGCATCAAGAACCAAGTTTGTAGATGATGATCAAAAATGCTACTTGGATGTCAGCTACTACTTTGAAATTCAGAAGAATTGGGGAACACCTAACTGAGGTGTAAACTTGAGTTAATTTATTGATGAATTTTCTTAATCTNGCATATTAATTGTATCTTTGTGGAACAGATCGGAACTCAAGTACTTGTTGTTTAACAATTCCTATAATCAGCGCCATTGTGCACATGCATGCTACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01132	13670	15764	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005094 Rho GDP-dissociation inhibitor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001132s00025470.1	PF02115.12	Rho_GDI	69	263	1.10E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.923
SRR1783600	control	12.938
SRR1783602	moderate drought stress	7.943
SRR1811619	moderate drought stress	8.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.370
DRR006520	Root Summer glycyrrhizin high producing strain	20.346
DRR006521	Root Winter glycyrrhizin high producing strain	0.096
DRR006522	Root Winter glycyrrhizin high producing strain	0.094
DRR006523	Root Summer glycyrrhizin low producing strain	6.660
DRR006524	Root Summer glycyrrhizin low producing strain	6.978
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.294
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.100

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.915
SRR2868004	Drought Stress (root)	19.282
SRR2967015	Control (root)	17.849

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.952
SRR9715740	Leaf	3.715
SRR9715741	Leaf	4.389
SRR9715739	Root	1.161
SRR9715742	Root	1.779
SRR9715743	Root	1.538

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.035
SRR8749028	MeJA induced 9h	1.292
SRR8749029	MeJA induced 9h	2.635
SRR8749030	Uninduced	0.707
SRR8749031	Uninduced	0.299
SRR8749032	Uninduced	0.149

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.702
SRR8400027	Control - Root	28.701