Gene detail

Gene detail information of Glyur001132s00025468.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10830.1	1.00E-141	15-cis-zeta-carotene isomerase
NR	XP_003601746.1	0	hypothetical protein MTR_3g084950 [Medicago truncatula]
COG	YP_007054308.1	5.00E-98	hypothetical protein Riv7116_1190 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9SAC0\|ZCIS_ARATH	2.00E-175	15-cis-zeta-carotene isomerase, chloroplastic (Precursor)
trEMBL	tr\|B7FL73\|B7FL73_MEDTR	0	15-cis-zeta-carotene isomerase {ECO:0000313\|EMBL:AES71997.1}

Sequence

Transcript Sequence

>Glyur001132s00025468.2
CTCCATATTCCGTTCCAATCCACTATGCTCCCNTTGTCTTAAGTATCCAAACATGGAAAGTGGAAACTGGAAAGTGTAAGCCCCCAACCTCCTTCTGAGCTGTGAGAAAGAGGTTAACAGCAGAAACTAGCAGAAGTCGTAACTGACATGGCTGCTTCTGTTGTGCTCTCTACCCCTTTCTCCTCCACCTNTCATCCATCCCTATTCGCCTCGTCTTCTTCAAACTCAATCTCCAAACGGAAACAGAGTTGGCAATGCTCTTCCTCCNANTTGCCTCGTTTGTTGAATTCAAAAGCACTGTTCTTTTCTCGCAACAAGTTCGTTACCCATTCTTCGACGAGGGACAAGGACTCGACGAGCTTTGTAGGCGAGGACTCCGCGGCGTTTGATTTGGGGGAACAGAAAATATCTTCCTGGATTTATTTCACNGCCATTTTGGGAGTGGTGCTGTTTGTTCTCAACGTGGCATGGATTGATAATTCAACTGGCTTCGGCAAAGCCTTCGTTGATGCAGTTTCAGCGCTTTCCGATTCTCACGAGGTGGTAATGCTGACCCTGATTCTCGTATTTGCCATTGTCCACAGTGGCTTGGCCAGCCTCCGGGACACTGGCGAGAAAATCATCGGTGAAAGACCTTACCGTGTTCTTTTTGCCGGGATATCACTNCCTTTGGCTGTCAGTATGGTTGTGTATTTTATTAACCACAGATATGATGGACTTCAACTCTGGCAGCTCCAGAGTACTCCTGGGATCCATCAGCTTGTGTGGCTTTCTAATTTCATCTCTTTCTTTTTCCTNTATCCTTCAACCTTTAATCTTTTAGAGATTGCTGCAGTTGACAAGCCTAAGTTACATCTATGGGAAACTGGGATCATAAGAATAACCAGGCATCCACAGATGGTTGGGCAGGTAATCTGGTGTCTTGCTCATACAGTTTGGATTGGAAATTCTGTGGCTGTTGCAACTTCAATTGGCTTAATTGCACATCATCTATTTGGTGTGTGGAATGGAGATAGGCGACTTGCTAAAAGATATGGGGAAGATTTTGAGAGAGTNAAGGGTCGAACAAGTGTTGTCCCTTTTGCAGCAATCCTTGATGGCCGTCAAAGATTACCTAAAGATTTCTACAAGGAGTTTATTAGAGTACCATACTTCACAATTACTGCACTAACACTAGGAGCTTACTTGATACACCCGCTTATGCAGGCTGCTAGTTTCAACCTTCATTGGTAGGTGGAAAATATAATGTCATTTTTATGTAAAATTCTAATTTATAGGAGTGAAACGCCTATGCCACGTGTTGTAGTATGCATCAATAGTCGGAAAAAGATTCTCTCTATTTTTTTTTCTCAATTTCCTTCATTACTATGCTTTTGGAGAATAAATGATGTTCTTCACTATATGTGTATTATATTTATTTCATTTATTCTCCCAAAAGTATAGAGAGTAATAGAAGAAATAGAAAAAAAAAATATAGAGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01132	5486	10255	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15744	Z-ISO	EC:5.2.1.12	Carotenoid biosynthesis	map00906
			Carotenoid biosynthesis	map00906

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001132s00025468.2	PF07298.6	NnrU	133	352	6.70E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.703
SRR1783600	control	4.257
SRR1783602	moderate drought stress	3.053
SRR1811619	moderate drought stress	3.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.952
DRR006520	Root Summer glycyrrhizin high producing strain	5.787
DRR006521	Root Winter glycyrrhizin high producing strain	9.451
DRR006522	Root Winter glycyrrhizin high producing strain	8.781
DRR006523	Root Summer glycyrrhizin low producing strain	5.101
DRR006524	Root Summer glycyrrhizin low producing strain	4.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.261
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.716

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.838
SRR2868004	Drought Stress (root)	4.550
SRR2967015	Control (root)	5.106

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.008
SRR9715740	Leaf	33.956
SRR9715741	Leaf	15.731
SRR9715739	Root	12.053
SRR9715742	Root	6.004
SRR9715743	Root	8.957

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.320
SRR8749028	MeJA induced 9h	3.638
SRR8749029	MeJA induced 9h	2.834
SRR8749030	Uninduced	4.031
SRR8749031	Uninduced	0.558
SRR8749032	Uninduced	0.972

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.488
SRR8400027	Control - Root	7.866