Gene detail information of Glyur001131s00029305 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03170.1 | 8.00E-25 | FASCICLIN-like arabinogalactan-protein 11 |
| NR | ACJ84960.1 | 2.26E-140 | unknown [Medicago truncatula] |
| COG | YP_003706348.1 | 2.00E-06 | beta-Ig-H3/fasciclin [Truepera radiovictrix DSM 17093] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 1.00E-51 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|B7FJN1|B7FJN1_MEDTR | 8.00E-141 | Uncharacterized protein {ECO:0000313|EMBL:AFK41673.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01131 | 86797 | 87795 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001131s00029305.1 | PF02469.17 | Fasciclin | 113 | 249 | 7.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 139.690 |
| SRR1783600 | control | 139.447 |
| SRR1783602 | moderate drought stress | 149.807 |
| SRR1811619 | moderate drought stress | 148.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.668 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.280 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.646 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.660 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.861 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 99.378 |
| SRR2868004 | Drought Stress (root) | 129.159 |
| SRR2967015 | Control (root) | 113.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.118 |
| SRR9715740 | Leaf | 5.593 |
| SRR9715741 | Leaf | 1.091 |
| SRR9715739 | Root | 88.734 |
| SRR9715742 | Root | 262.355 |
| SRR9715743 | Root | 186.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.007 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 364.232 |
| SRR8400027 | Control - Root | 579.388 |