Gene detail

Gene detail information of Glyur001131s00029302

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18880.1	7.00E-91	heat shock transcription factor A4A
NR	AGJ83756.1	0	heat stress transcription factor A-4a-like protein [Caragana korshinskii]
Swissprot	tr\|O49403\|HFA4A_ARATH	2.00E-120	Heat stress transcription factor A-4a
trEMBL	tr\|R9R6C4\|R9R6C4_9FABA	0	Heat stress transcription factor A-4a-like protein {ECO:0000313\|EMBL:AGJ83756.1}

Sequence

Transcript Sequence

>Glyur001131s00029302.1
CCGCGTTGACCTTCAATTCACCAAACATGTTACAGAGAAGAGAGAAACCTATGTAGAAAATTATCTACGCGGTTCAACAAGGAAGAAAGGATCCCAATAATTCGAAGCACCGATAATCTATCTGGAAAGAACCCTTCCTTTTTTCTCTCTGCAACTTATAAGCTCCCTCTCTCTATCTCTCTCATCCTTTCCGAGGTGCAAAGTTCCAACCTATTGTTTTTTTTATAGATATTTATTTTTTTTCTGTTGAATTTGTTGCTTTACGTGTAAGTTTCCCGAGTTTTTCGCATAAAGGGAAAGAAAAATACTGTAGTTGAAGATTTGTATGAGCTTTTTGGTAAATATAGAAAGGAGATGAACTTTTGCTATCTGGGTATTTTGGGTCAACAGAAGGAAGCTGAAAACTTGTCTATTTTGATGATTTCNTAGGTTATATACTTTGATTATGGTTGTGGAGTGTTCTTCTTTGTGATTAGGTATACGGGGTTTTGGAATTATTGGTTATTGTTAATTTTGCTCTAGATGGTTTTTCTGGGGTTTTGTCTTGGTACGAATTGAGAGAGAAAAAAAGTTTTTTTTTTTTTTTTAATTTCTGGGGTGTTCCAGTATATTGGGGGTTCTTTGGAAACTTTTGGGAATTGATTGGTTCGTTTTTTCGGTTTTCTTTGGGAGGGTGAGATCTGTGTGTGGGGATTGGGGTTTGACTAATGGATGAAGCACAGGGAAGTTCAAGTTCCTTGCCTCCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACGGATCCGATTGTTTCCTGGAGTATGACTAACAAAAGTTTCATTGTATGGAATCCCCCAGAATTTGCAAGGGTTTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCGAGTTTTATCAGGCAGCTGAACACATATGGATTTAGGAAAACTGATCCAGAACAATGGGAATTTGCCAATGATGACTTTGTAAGAGGGCAGCCACATCTGATGAAGAATATCCATAGACGGAAACCGGTTCATAGCCATTCTTTACAGAATCTCCAAGCGCAAGTGCCAATGGCGGAGTCGGAAAGGCAGAGCTTAATTGAAGAAATAGAGAAGCTCAAACATGATAAAGAACGACTCCTCATGGAGTTAAAGAAGTATCAACATGATTGGCAAACATATGAGATTCAAATACATTGCTCGAAAGATCGGTTGGAAAAATTGGAACAGAAGCAACAAAAGTTGGTGTCTTCAGTTTCTCAAGTACTGCAGAAACCCATGATTGCTGCAAATCTCTTGCCATTGACAGAAACTATGGATAGAAAACGGAGGTTGCCGAGAAGTGGGTACTTTAATGATGAAGCTAGCATTGAAGATGCTGTTGAAACTTCCCTAATGTTACCTGGAGAAAATGCAGAGGGTACCTCTGTTTTGAACAGGGAGCGATTGGATCAACTTGAGTCATCCATGGTATTTTGGGAGACTATTATGCATGAAGGTGCTGACACCNTCGTTCACATTCATTCAAGCATGGATTTTGATGAATCTACAAGTTGTGCAGAAAGTCTGTCGATATCTTGTGCACAACTAGAGGTTGAAGTTAGACCTAAGTCATCTGGAATTGACATGAACTCTGAGCCAGCTGCAGCTGCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTATAGGANCCACCATCGCAGCAACTGGTGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCAGCAGAAGCACAGGAAGTGCAATCCAAAAGAAAGGATTCTAATGGCAGAAAAAATGAAGGAAAACCTAGTGATCTAGGCAGATTTTGGTGGAATATACGGAATACAAATAATAATCTTCCAGAACAGATGGGGCATGTTAGTCAAGCAGAGAAAACTTAGTAGCAAAATTGATTATTTCTTCGTGCTTNTGATGCCCGCAATCACATGTAATAAATCTAGGTATGCATTGTTTTGTCTGCAATAAAAATACATATTCCATATTTTGGGTGGGATGAATCTTTGCATCTTCCATTGATTTTAGTTAATTATGTCAGTCGTTTGTCTCTTTTAGTCCCATTATGCCAAAAGCTGCCTTTTGCGGTATGGTTCAAGGTTTTAAATTGTGGACCACATCATGCAGCTGCAATATTGCATCACAATTGCAACCATGGCTGTGATTGTAACTGCAATCGATAACCTTCGTATGGTTATCTCCATTGTGTTCCTTTTCTCTTTCATCTCTTCGAGATGTAACCTTACCATATGACAGAAGCCACCTGCNGGTGCCTTCTGTTGCCATCATTTTTGCGAATGGAAATAATTCCACAATTGCAGGGTGGTTCTGATGTAGTTGTAAACACTATTGCNACACATTGTGGCTGCATCGAGTGATGCAGTCCACAAATGCAATCCACAATTTCAAACCAAGAACAACAAATAGTATTTTAGATAATGCTGGACTATACTGTTTTGCAAATAGTAATGGAAAAGACTTTTTGTTTTCGTGAATTTATTGAGAGTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01131	65426	68067	+

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001131s00029302.1	PF00447.12	HSF_DNA-bind	14	105	1.70E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.749
SRR1783600	control	4.786
SRR1783602	moderate drought stress	6.363
SRR1811619	moderate drought stress	6.346

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.507
DRR006520	Root Summer glycyrrhizin high producing strain	22.598
DRR006521	Root Winter glycyrrhizin high producing strain	11.995
DRR006522	Root Winter glycyrrhizin high producing strain	11.577
DRR006523	Root Summer glycyrrhizin low producing strain	34.194
DRR006524	Root Summer glycyrrhizin low producing strain	33.864
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.839

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.915
SRR2868004	Drought Stress (root)	19.981
SRR2967015	Control (root)	24.858

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.619
SRR9715740	Leaf	24.840
SRR9715741	Leaf	28.429
SRR9715739	Root	5.442
SRR9715742	Root	31.148
SRR9715743	Root	25.302

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.447
SRR8749028	MeJA induced 9h	35.386
SRR8749029	MeJA induced 9h	42.644
SRR8749030	Uninduced	48.015
SRR8749031	Uninduced	57.763
SRR8749032	Uninduced	41.762

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.532
SRR8400027	Control - Root	18.358