Gene detail

Gene detail information of Glyur001131s00029299

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18910.1	3.00E-106	NOD26-like intrinsic protein 1;2
NR	XP_003629862.1	1.60E-155	Aquaporin NIP1-2 [Medicago truncatula]
COG	NP_866369.1	7.00E-57	nodulin-26 [Rhodopirellula baltica SH 1]
Swissprot	tr\|P08995\|NO26_SOYBN	5.00E-137	Nodulin-26
trEMBL	tr\|Q8W4T7\|Q8W4T7_MEDTR	6.00E-156	Multifunctional aquaporin {ECO:0000313\|EMBL:AAL32128.1}

Sequence

Transcript Sequence

>Glyur001131s00029299.1
ATGGCTAATAATTCAGCGAGAATCGAAACCCGTGATGTGGTTTTAGATGTAAATAAGGATGCCTCCAAAACAAGTCATGAAGGCTCAGGCACCTATGTCTCTGTCCCTTTTTTGCAGAAGTTAATAGCTGAGGTGGTGGGCACGTATTTTTTGATATTTGCTGGCTGTGGTTCGGTGGTGGTGGACAAGAACAACGACCATATAGTCACACTTCCCGGGATCGCAATTGTTTGGGGACTTGCTGTGTTGGTTCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTCACCATTGCCTTTGCTAGCACCAGGAGGTTTCCATGGTTGCAGGTACCAGCTTACGTAGCAGCTCAGCTACTAGGAGCCACACTTGCAAGTGGAACACTGAAACTAATATTCAGTGACAAGCATGCGGTGTTTTCAGGAACACTCCCATCTGGGTCTAACCTCCAGGCTTTTGTGGTTGAATTCATAATCACTTTTTACCTCATGTTTGTCATCTCCGGGGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCTGGGATTGCAATTGGATCTACAATACTGCTCAATGTGATGATTGCAGGGCCGGTGACGGGGGCATCAATGAACCCAGCAAGAAGCCTAGGACCTGCTTTAGTACACACAGAATACAGAGGAATATGGATATACTTGGTGGCACCGGTTGTTGGGGCGGTGGCGGGAACATGGGTCTACAACACCGTAAGGTACACTGACAAGCCATTGCGTGAGATCACCAAGAGTGGCTCCTTCCTCAAAGATGCAANGGCAAGCAATGGAACCCATGAGGTAGTTCTAGACATGAACAAGGATGTCTCTAAAGAAAGTACCGAAGACTCAGGCACCTATGCCACTTTGGTAGCTGAGGTGGTGGGAACCTATTTCTTGATATTTGCTGGATGTGCTTCAGTGGTGGTGAACAAGAACAATGAAAATGTAGTGACACTTCCTGGGATTTCAATNGTTTGGGGANTGGTTGTGATGGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTCACCATTGCTTTTGCCACCACCAGAAGGTTTCCCTTGAAGCAGGTACCAGCTTATGTGGCAGCTCAAGTCCTTGGNTCCACACTTGCAAGTGGAACTCTCAGACTAATATTTAGTGGCAAGCATGACCAGTTTGCNGGAACACTCCCTGCTGGGTCTAACCTCCAAGCTTTTGTGATTGAATTCATAATCACTTTNTACCTTATGTTTATCATATCTGGGGTTGCCACCGATAATAGAGCGATTGGTGAGTTGGCTGGNATTGCCGTTGGGTCTACCGTACTGTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCGATGAACCCAGCAAGAAGCATAGGGCCTGCTTTTGTACACCATGAATACAGGGGAATATGGATATACTTGGTGTCTCCAACGCTAGGGGCAGTGGCTGGTGCTTTGGTCTATAACACCATTCGATACACCGATAAGCCAGTTCGTGAGATCACCAAGAGTGCCTCTTTCCTCAGAGGAGCAGGCCGTAGTGGCAGCTCCAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01131	41839	49390	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001131s00029299.1	PF00230.15	MIP	33	245	4.80E-65
Glyur001131s00029299.1	PF00230.15	MIP	296	503	1.60E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.820
SRR1783600	control	0.893
SRR1783602	moderate drought stress	0.361
SRR1811619	moderate drought stress	0.353

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.067
DRR006520	Root Summer glycyrrhizin high producing strain	0.098
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.206
DRR006524	Root Summer glycyrrhizin low producing strain	0.273
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.057
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.715
SRR2868004	Drought Stress (root)	12.970
SRR2967015	Control (root)	14.706

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.199
SRR9715740	Leaf	3.406
SRR9715741	Leaf	0.129
SRR9715739	Root	1.148
SRR9715742	Root	0.165
SRR9715743	Root	0.227

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.293
SRR8749028	MeJA induced 9h	0.534
SRR8749029	MeJA induced 9h	1.176
SRR8749030	Uninduced	2.260
SRR8749031	Uninduced	3.933
SRR8749032	Uninduced	1.457

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.846
SRR8400027	Control - Root	4.329