Gene detail information of Glyur001131s00029293 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60500.1 | 1.00E-166 | Dynamin related protein 4C |
| NR | XP_003524214.1 | 0 | PREDICTED: dynamin-related protein 4C-like [Glycine max] |
| Swissprot | tr|Q9ZP55|DRP4C_ARATH | 0 | Dynamin-related protein 4C |
| trEMBL | tr|I1KSI9|I1KSI9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G12710.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01131 | 8728 | 10770 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001131s00029293.1 | PF00350.18 | Dynamin_N | 64 | 227 | 1.80E-37 |
| Glyur001131s00029293.1 | PF01031.15 | Dynamin_M | 242 | 406 | 1.40E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.756 |
| SRR1783600 | control | 31.304 |
| SRR1783602 | moderate drought stress | 19.565 |
| SRR1811619 | moderate drought stress | 19.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.126 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.765 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.758 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 73.172 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 71.567 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.504 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.674 |
| SRR2868004 | Drought Stress (root) | 27.767 |
| SRR2967015 | Control (root) | 20.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.124 |
| SRR9715740 | Leaf | 7.637 |
| SRR9715741 | Leaf | 11.306 |
| SRR9715739 | Root | 16.020 |
| SRR9715742 | Root | 85.164 |
| SRR9715743 | Root | 76.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.591 |
| SRR8749028 | MeJA induced 9h | 0.754 |
| SRR8749029 | MeJA induced 9h | 0.203 |
| SRR8749030 | Uninduced | 0.243 |
| SRR8749031 | Uninduced | 1.867 |
| SRR8749032 | Uninduced | 1.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.972 |
| SRR8400027 | Control - Root | 21.680 |