Gene detail

Gene detail information of Glyur001131s00029291

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18930.1	2.00E-61	RNA ligase/cyclic nucleotide phosphodiesterase family protein
NR	XP_004504260.1	3.53E-117	PREDICTED: cyclic phosphodiesterase-like [Cicer arietinum]
COG	YP_001372242.1	6.00E-13	HAD family hydrolase [Ochrobactrum anthropi ATCC 49188]
Swissprot	tr\|O04147\|CPD_ARATH	8.00E-77	Cyclic phosphodiesterase
trEMBL	tr\|G7L7Z2\|G7L7Z2_MEDTR	3.00E-116	Uncharacterized protein {ECO:0000313\|EMBL:AFK48543.1}

Sequence

Transcript Sequence

>Glyur001131s00029291.1
CACGGGATCTAGTTTTTAAATAAAAAAAATATCATATATTTGTTCATCAAAACTAAATGTATATTATCATATATCACTGTCAAAAAATATATTATCATATATCAAATTATCAATCAATTTCATGAAAGCAGTTAGAGGAGAGGGAATATGCGGAGCATGTGCCACGTCACATAATTAAGCGAAGCATAAGAGAAAGAAAAACCTTCTCTCATCTCATGCTTTGGGAATTTGGATATCGATGTCAACAATGGGAACCCAGAAGGAAGTGTATTCGGTGTGGGCGATCCCACCGGAAGATGTGTGTGCCAGACTCACAGGGCTCATGAGCACCCTCCGATCAGAGTTCGGTGGGCCCCAGTTCGAGCCCCACATGACGGTCGTCGGAGCCATCGGGTTGACCGCCGACGACGCCCTCAACAAGCTCCGGTCGGCGTGTGAAGGTCTCAAGGCTTTCCAAGTCACCGTTGACCGCGTCGCCACCGGCACCTTCTTTTATCAGTGTGTTTATCTCCTCCTTCATCCCACCCCTCAGATAGTGGAAACCAGCGCACACTGCTGCAACCATTTTGGTTATAGGAATTCAACTCCTTACATGCCACACCTGAGCCTTCTGTATGGAGATTTGACTGATGAAGAGAAGCAAAAGGCTCAAGAAAGGGCTAATATTCTTGACGACAGTCTCAGTGGCTTGAGCTTTCAGATAAGTCGGCTTGCATTATACAAAACAGACACTGAAGACAAAACTCTGAAATCTTGGGAGAAAATTGCTGAATGCACTCTCAGTCCAAATTAGCTTGTCAACAGTTATAACCTCACAAGCTGTTGTATACAGCAACCATAAATAAATAAAAGAACTTTGTTATCTCTAATATTGTCTTAATATCTTATAAACTAGTTGTTTTCTGCAACCGCATTGCAGTTTTTTTTTATACTCTGTAGTTGTATTCTTAGTCTTTCTACTGTGTGCTCGGCAATTTCCATAGTCCATAGATAATGTGGAAGAAGACCCTCATGTCAAATCTAAAAGAGAAGATCAGCATTATGCATTAGAGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01131	3143	6838	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0004112 cyclic-nucleotide phosphodiesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001131s00029291.1	PF07823.6	CPDase	11	181	4.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.452
SRR1783600	control	23.545
SRR1783602	moderate drought stress	25.121
SRR1811619	moderate drought stress	25.186

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.571
DRR006520	Root Summer glycyrrhizin high producing strain	25.139
DRR006521	Root Winter glycyrrhizin high producing strain	12.991
DRR006522	Root Winter glycyrrhizin high producing strain	12.216
DRR006523	Root Summer glycyrrhizin low producing strain	16.644
DRR006524	Root Summer glycyrrhizin low producing strain	16.662
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	90.275
SRR2868004	Drought Stress (root)	83.461
SRR2967015	Control (root)	57.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.883
SRR9715740	Leaf	34.546
SRR9715741	Leaf	39.600
SRR9715739	Root	21.940
SRR9715742	Root	18.268
SRR9715743	Root	15.308

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.014
SRR8749028	MeJA induced 9h	41.034
SRR8749029	MeJA induced 9h	47.449
SRR8749030	Uninduced	39.845
SRR8749031	Uninduced	40.617
SRR8749032	Uninduced	64.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.449
SRR8400027	Control - Root	54.793