Gene detail

Gene detail information of Glyur001131s00029290

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02040.1	4.00E-18	peptide transporter 2
NR	XP_004504417.1	1.48E-86	PREDICTED: probable peptide/nitrate transporter At1g27040-like [Cicer arietinum]
Swissprot	tr\|Q8VYE4\|PTR12_ARATH	3.00E-26	Protein NRT1/ PTR FAMILY 4.5
trEMBL	tr\|G7L7Z1\|G7L7Z1_MEDTR	4.00E-81	Peptide/nitrate transporter {ECO:0000313\|EMBL:AET04348.1}

Sequence

Transcript Sequence

>Glyur001131s00029290.1
GCGTTTGCTTTCGAGAACATGGCAACACTTTCACTGGGAGTGAACTTGGTGTCATACTTCAATGTGGTTATGCATTATGAACTAGCAGATGCAGCTAACATGGTCACCAACTACGCGGGCGTTAGCCTGAAAGCTTCCCTGCCATCACATGGTGCGGATCAGTTTGATGAAAGGGACCCCAAAGAAGCAAGGCAAATGTCTAGCTTCTTTAACGGTCTCTTGTTAGCGATTTGTGTTGGTGGTGCGGTCAGCTTAACGTTTAATGTGTGGATACAAGACCAGAAAGGATGGGATTGGGGATTTGGAATCTCCACCATTGCTATAGTTTTGGCCATCATAATCTTTGCCTTTGGATTGCCACTTTACAGAATTCATGTTGCACAAAGAACAAATTGCATTATTGAGATCATGCAGGTGTACATTGCTGCCATTCGCAACAGAAATCTTCCCCTTCCTGCAAACCCTGTAGAACTATACGAGATTGAACAAGACAAAGAAGCTGCTGCAATGGAAATAGAGTATCTACCTCATAGGGATATTTTCAGGTTCAGTCCCACTAGTATCCAAAACTAACAATACATGTCACTTGATCATAAATTTAAGCACTAAAAAAGTGATACACGGTTACAGTAAAAGGCTCTTAAATTTTATACTACTAAATACCGCTGCTAACATGCATCATAAAATATCACTCGGTTCCAATGCATCTAGTTCTAAATTGATGTTCCTTTTGCACTGCAGGTTCTTGGACAAAGCAGCCATCCAAAGAAAATCTGATGTGCAACCTGAGAAACCAGAGGCTCCTCCAAGCCCATGGAAACTATGCAGAGTTACCCAAGTAGAAAATGCCAAGATCATTCTAAGCATGTTCCCAATATTCTGCTGCACAATAGTAATGACCCTTTGCCTAGCACAGCTCCAAACCTTCTCAGTCCAGCAAGGCTACACAATGGACACAAGGATCACCAAGAATTTCAACATCCCACCTGCATCCCTACCAATCATCCCAGTTGTCTTCTTAATCATCATCATCCCTTTCTACGACCGCATCTGTGTCCCTNTCCTGCGCAAATTCACCGGCATTCCGACCGGGGTCACTCACCTGCAGCGCATAGGAGTTGGCCTAGTCCTCTCCTGCATCTCCATGGCAATTGCAGCAATCATAGAGGTGAAAAGAAAAAGTGTTGCTAGAGACAACAACATGCTTGATGCCTTGCCAGGGGTTCAGCCACTGCCCTTTAGTATATTTTGGCTTTCTTTTCAGTACTTTGTGTTTGGCATAGCTGATATGTTTACCTATGTGGGGCTGCTTGAGTTCTTCTATTCAGAGGCACCAAAAGGGCTCAAGGCCACATCAACCTGCTTCCTTTGGAGCTCTATGGCCCTTGGCTATTTTCTGAGTAGCATACTTGTACAGATTGTGAACAGTGTAACCAAGAATATCACTGCTAGTGGAGGCTGGTTAGCAGGGAACAATATTAACAGAAACCATCTGAACCTCTTTTACTTGTTCCTTTCCCTACTGAGCTTGATCAACTTCTTTGTCTATTTGCTTGTTTCAAAGAGGTACAAGTACAAGCCTCAAAGCCCTGCAGNTATTATGGATGGCAATTCTGAGGAGTGAATAATATGATTGGAGAAAAGGTCTAATATGATTAATTAACAAATTACAAGTGGAAAATATGTGGGTTGTATTTGTACTTTTTTTTATTTGTCAAATGTATGTGAGAAAATAGAGGTCTGCACTTTTTCTTTTTTGCCTTGTAAGTTCATGAGTTGCTATTGTTTCAGAGAAATCCATGTGAAGTTTTATTCTACCTCATACCTTCAGACATGATTGATTTCTATTTTTGCACTTCTTTTTCACCTTCAAAAGAAAACATATCAGATGGGAGTAATGCTGTCTATTCTTGTTTGTTTTCATTTGAGTGGAATCATTACAGCATCTTCACCTGAATCTACAATACCATATACTTCCTGAAAGAGTGAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01131	282	3034	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001131s00029290.1	PF00854.16	PTR2	43	170	2.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.791
SRR1783600	control	1.780
SRR1783602	moderate drought stress	2.336
SRR1811619	moderate drought stress	2.446

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.903
DRR006520	Root Summer glycyrrhizin high producing strain	6.111
DRR006521	Root Winter glycyrrhizin high producing strain	4.505
DRR006522	Root Winter glycyrrhizin high producing strain	4.230
DRR006523	Root Summer glycyrrhizin low producing strain	5.659
DRR006524	Root Summer glycyrrhizin low producing strain	5.475
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.908

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.685
SRR2868004	Drought Stress (root)	38.609
SRR2967015	Control (root)	10.067

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.198
SRR9715740	Leaf	1.313
SRR9715741	Leaf	1.580
SRR9715739	Root	0.644
SRR9715742	Root	0.792
SRR9715743	Root	0.669

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.246
SRR8749028	MeJA induced 9h	6.962
SRR8749029	MeJA induced 9h	6.095
SRR8749030	Uninduced	6.501
SRR8749031	Uninduced	10.723
SRR8749032	Uninduced	7.553

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.342
SRR8400027	Control - Root	6.781