Gene detail information of Glyur001129s00037019 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15360.1 | 4.00E-32 | thioredoxin M-type 4 |
| NR | XP_004502573.1 | 1.26E-72 | PREDICTED: thioredoxin M-type, chloroplastic-like [Cicer arietinum] |
| COG | YP_007047706.1 | 6.00E-40 | thioredoxin [Cyanobium gracile PCC 6307] |
| Swissprot | tr|P07591|TRXM_SPIOL | 9.00E-50 | Thioredoxin M-type Md (Precursor) |
| trEMBL | tr|I3SEU9|I3SEU9_MEDTR | 5.00E-73 | Uncharacterized protein {ECO:0000313|EMBL:AFK38791.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01129 | 65746 | 67276 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001129s00037019.1 | PF00085.15 | Thioredoxin | 66 | 145 | 5.50E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.264 |
| SRR1783600 | control | 3.247 |
| SRR1783602 | moderate drought stress | 4.234 |
| SRR1811619 | moderate drought stress | 4.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.520 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.776 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.942 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.576 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.230 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 210.652 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 214.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.240 |
| SRR2868004 | Drought Stress (root) | 64.013 |
| SRR2967015 | Control (root) | 60.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 191.084 |
| SRR9715740 | Leaf | 208.166 |
| SRR9715741 | Leaf | 133.708 |
| SRR9715739 | Root | 1.003 |
| SRR9715742 | Root | 2.827 |
| SRR9715743 | Root | 2.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.167 |
| SRR8749028 | MeJA induced 9h | 45.136 |
| SRR8749029 | MeJA induced 9h | 31.235 |
| SRR8749030 | Uninduced | 15.954 |
| SRR8749031 | Uninduced | 3.642 |
| SRR8749032 | Uninduced | 9.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.228 |
| SRR8400027 | Control - Root | 29.275 |