Gene detail information of Glyur001129s00037018.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21450.1 | 0 | SCARECROW-like 1 |
| NR | XP_003526667.1 | 0 | PREDICTED: scarecrow-like protein 1-like isoformX1 [Glycine max] |
| Swissprot | tr|Q9SDQ3|SCL1_ARATH | 0 | Scarecrow-like protein 1 |
| trEMBL | tr|K7KUM7|K7KUM7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G12701.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01129 | 60382 | 63025 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001129s00037018.1 | PF03514.9 | GRAS | 243 | 613 | 5.10E-132 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.991 |
| SRR1783600 | control | 46.881 |
| SRR1783602 | moderate drought stress | 57.916 |
| SRR1811619 | moderate drought stress | 56.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.485 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.342 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.566 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.447 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.541 |
| SRR2868004 | Drought Stress (root) | 60.968 |
| SRR2967015 | Control (root) | 49.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.457 |
| SRR9715740 | Leaf | 28.197 |
| SRR9715741 | Leaf | 26.600 |
| SRR9715739 | Root | 22.509 |
| SRR9715742 | Root | 42.154 |
| SRR9715743 | Root | 39.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.988 |
| SRR8749028 | MeJA induced 9h | 73.531 |
| SRR8749029 | MeJA induced 9h | 38.696 |
| SRR8749030 | Uninduced | 67.137 |
| SRR8749031 | Uninduced | 50.024 |
| SRR8749032 | Uninduced | 25.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.077 |
| SRR8400027 | Control - Root | 37.498 |