Gene detail information of Glyur001128s00028309.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17220.1 | 1.00E-14 | Protein kinase superfamily protein |
| NR | CBI37651.3 | 2.87E-18 | unnamed protein product [Vitis vinifera] |
| Swissprot | tr|O48814|BIK1_ARATH | 5.00E-17 | Serine/threonine-protein kinase BIK1 |
| trEMBL | tr|F6I0K2|F6I0K2_VITVI | 1.00E-18 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60468.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01128 | 79569 | 80061 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.2.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001128s00028309.1 | PF07714.12 | Pkinase_Tyr | 42 | 87 | 7.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.247 |
| SRR1783600 | control | 0.218 |
| SRR1783602 | moderate drought stress | 2.293 |
| SRR1811619 | moderate drought stress | 1.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.678 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.218 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.582 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.343 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.065 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.415 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.444 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.079 |
| SRR2868004 | Drought Stress (root) | 1.167 |
| SRR2967015 | Control (root) | 0.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.266 |
| SRR9715740 | Leaf | 0.758 |
| SRR9715741 | Leaf | 1.328 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.061 |
| SRR9715743 | Root | 0.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.263 |
| SRR8749028 | MeJA induced 9h | 0.086 |
| SRR8749029 | MeJA induced 9h | 0.090 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.745 |
| SRR8400027 | Control - Root | 0.983 |