Gene detail

Gene detail information of Glyur001128s00028308.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07420.1	6.00E-171	asparaginyl-tRNA synthetase 2
NR	XP_006599143.1	0	PREDICTED: asparagine--tRNA ligase, cytoplasmic 2-like isoform X2 [Glycine max]
COG	YP_006282966.1	6.00E-101	Asparaginyl-tRNA synthetase [Pectobacterium sp. SCC3193]
Swissprot	tr\|Q9SW95\|SYNC2_ARATH	0	Asparagine--tRNA ligase, cytoplasmic 2
trEMBL	tr\|I1MM63\|I1MM63_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G09690.1}

Sequence

Transcript Sequence

>Glyur001128s00028308.1
ATGGCCTACCAATCCCAAGCCCAAGAGGTCGTGAGGCCTTTCAAGTACTCGAACCGGGTTCAGTTGAAGGCCATTCTGGATCAGCGAAGCGAGGAGCTGGTGGGGCAGAGAGTGGTGGTCGGCGGGTGGGTAAAGTCGTCGAGGGAGGTTGAGAAGCTGTCGCCTCCTCCGCCGCCATTCAAGACGGAGGAAGAGGCGGTTGTTGATCATCATCGTGAAACGCAGAAGAAAGACGTGTCGTGCGCGGAGATTCTCCAGTCTCGGATTCCATTGATTCGTAGCATATTGGACGTTTTCGGAGGAAGCGGTTCCTATGCTACGCGCCGCAAGAAACAACAACGCGACTCTGTGACTGTGGCCTCTCCTAAGCCTCTCCCTCCAAAACCTCCCATCGCCTATCTGCTTCTCACTGACGGTTCCTGCGTTCCCACCCTTCAGGTTATGGTTGATTCCTCAGTAGNTACACCAAGCCGTCTTCTGCCAACTGGAACCTGCATATTAGTGGAAGGTCAACTGGAAAGACCATCAGCAGCAGGGAAGCATGTTATTCAGCTTAAAGCTGACAGAGTTCTTCACATTGGGACAGTGGACTTTGACAAATATCCATTGACAAAGAAACGAGTTCCACTGGATGCGTTAAGAGATTACTCCCAATTTCGNCCCCGAACAACTACGGTGGCAACTGTCATGCGAATTCGTAGTGCTCTGTCTTTTGCAACCCACTCATTCTTCAAGGATCATGCATTTTTTGACGTGCAAGTACCCACTATAACCGCCACAGGCTGCGAAGGATTTAGCAACAAGTTCCAGGTTACTGCCCTGGATCATAAAGCAGACAAGGAGAAGCTGAGTACTATTTATGAGACTGCAGGTATCAGCCTTGAACTTGTGAAGGCAGCTGCCAAAGAGAAAAGCAACCAAATTGAAACTTTGAAAAGAACTGAAAGCAATAGGGAAGCACTGGCTGCCGCAATTCAGGATCTGCGAAAAACAAATGAACTGGCATCACAGTTGGAAGTGAGAGAAAAGAAAAAATTCGGAACTTCATNGAAGGATGACAAAGCAGACTCTTCCAAAGACTTTTTCCCTTCCCAAACTTATTTGACTGTCTCTGGCCGCTTACATCTGGAGAGTTATGCATGTGCTCTTGGAAATGTCTACTCATTTGGACCCAGATTTCAAGCAAATAAAATAGATTCTGCTACACATGCTGCAGAAATGTGGATGGTTGAGGTTGAAATGGCGTTTGCTCAATTGACGGATTCCATGAACTGCGCTAATGACTTATTCAAGCACTTCTGTGAGTGGGTTTTGAATAATTGCTCTGAAGATATGAAGTTTGTTGCCAAAAGAATTGACANCATCTGCATGGATCGTCTTCGGCAGATTATATCAGGTTCCCCTGAAATGATTTCCTATAATGAGGCTACAGGTGTTCTTAGAAAGGTGTCTTCCCAGGCTGACGATAGGAAATTTGAAACAAATTTTGAACCAGGTGTTATACTCACTTCAGATCATCTAAGCTATCTAGCTGATGCCATCTACCAGAAGCCGGTTATAATACACAGTTATCCAAAAGAAGCTAAGCCATTTTACACTCGCATAAATGATGATGGAACTGTTGCTGCNTTTGATTTGGTTGTCCCAAAGGTGGGAACAATAATTTCTGGCAGCCAAAATGAGGAACGTCTTGACATGATAAGCTCGAGAATTGATGAGTTGGGTTTGCCACAAGAGAAGTATGAATGGTACTTGGATCTGCGTAGAAATGGAACGGTCAAGCACTCCGGGTTCACTCTGAGATTTGACCTTATGGTCCTTTTTATAACTGGCCTTAGCAATGTTAGGGATGTTATCCCTTTTCCAAGAAGCTATGGCAAGGTCAACAACTAATTAAATTTTGGGCCAAGATTCAAGTTGTCCTCGAGGCTATCGGCATTCAAACTTCAAATGTTCATGATAGGAGGAAAGTAAGACATATGATTGTGTAACATATCAAGTGATTGCGTGTATGCACAATGTATATAAGGAAATTTATGATTTCTGACATTGAAGATAGGAAATAGGTGCGTCAGTGTGTGCATGCGCATGTAATAGAATGAGAATAGACCTCAACTCACCCCATCAAGCAATATATTGGAGGCCTTGAAGTCTCTGTAAATTACTTTCTCGGATGTATGCAAAAATGCAAGGCCACGAGCTGCTCCAATTGCTATCTTAAGCCTCATGTCCCAAGGAAGCGGTTAAACAACAGAGCCCCCTATATACGTACATACAAGTAAAAAAATGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01128	74396	79482	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01893	NARS, asnS	EC:6.1.1.22	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0006418 tRNA aminoacylation for protein translation

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001128s00028308.1	PF00152.15	tRNA-synt_2	216	277	1.70E-06
Glyur001128s00028308.1	PF00152.15	tRNA-synt_2	357	624	1.60E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.596
SRR1783600	control	2.712
SRR1783602	moderate drought stress	3.449
SRR1811619	moderate drought stress	3.516

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.711
DRR006520	Root Summer glycyrrhizin high producing strain	2.451
DRR006521	Root Winter glycyrrhizin high producing strain	0.389
DRR006522	Root Winter glycyrrhizin high producing strain	0.521
DRR006523	Root Summer glycyrrhizin low producing strain	8.789
DRR006524	Root Summer glycyrrhizin low producing strain	9.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.552
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.457

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.304
SRR2868004	Drought Stress (root)	7.656
SRR2967015	Control (root)	7.266

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.568
SRR9715740	Leaf	15.497
SRR9715741	Leaf	9.024
SRR9715739	Root	0.345
SRR9715742	Root	7.857
SRR9715743	Root	4.694

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.415
SRR8749028	MeJA induced 9h	1.476
SRR8749029	MeJA induced 9h	2.240
SRR8749030	Uninduced	3.594
SRR8749031	Uninduced	0.936
SRR8749032	Uninduced	0.949

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.242
SRR8400027	Control - Root	5.188