Gene detail information of Glyur001128s00028300 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07390.1 | 6.00E-34 | auxin-responsive family protein |
| NR | XP_004510221.1 | 1.70E-97 | PREDICTED: auxin-induced in root cultures protein 12-like [Cicer arietinum] |
| Swissprot | tr|Q94BT2|AIR12_ARATH | 3.00E-44 | Auxin-induced in root cultures protein 12 (Precursor) |
| trEMBL | tr|G7LEE2|G7LEE2_MEDTR | 4.00E-88 | Auxin-induced in root cultures protein, putative {ECO:0000313|EMBL:AET01366.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01128 | 39513 | 40226 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001128s00028300.1 | PF04526.8 | DUF568 | 93 | 189 | 2.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.323 |
| SRR1783600 | control | 46.085 |
| SRR1783602 | moderate drought stress | 25.914 |
| SRR1811619 | moderate drought stress | 26.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.416 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.531 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.455 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.534 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.768 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.344 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.814 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 93.909 |
| SRR2868004 | Drought Stress (root) | 40.620 |
| SRR2967015 | Control (root) | 43.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 56.759 |
| SRR9715740 | Leaf | 45.190 |
| SRR9715741 | Leaf | 37.663 |
| SRR9715739 | Root | 76.371 |
| SRR9715742 | Root | 47.532 |
| SRR9715743 | Root | 47.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.539 |
| SRR8749028 | MeJA induced 9h | 8.553 |
| SRR8749029 | MeJA induced 9h | 5.609 |
| SRR8749030 | Uninduced | 2.783 |
| SRR8749031 | Uninduced | 0.400 |
| SRR8749032 | Uninduced | 0.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.679 |
| SRR8400027 | Control - Root | 67.921 |